View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8488_low_17 (Length: 309)

Name: NF8488_low_17
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8488_low_17
NF8488_low_17
[»] chr4 (9 HSPs)
chr4 (1-261)||(14173950-14174208)
chr4 (1-261)||(14178704-14178962)
chr4 (1-261)||(28611662-28611920)
chr4 (1-259)||(28606902-28607158)
chr4 (1-261)||(44161599-44161855)
chr4 (1-261)||(11104482-11104738)
chr4 (50-260)||(48826793-48827000)
chr4 (155-256)||(48708155-48708256)
chr4 (81-240)||(24726288-24726442)
[»] chr8 (4 HSPs)
chr8 (1-261)||(12930689-12930947)
chr8 (1-261)||(12935435-12935693)
chr8 (139-259)||(26504945-26505063)
chr8 (149-261)||(15588948-15589060)
[»] chr1 (1 HSPs)
chr1 (1-261)||(34907152-34907410)
[»] chr7 (5 HSPs)
chr7 (1-261)||(37040520-37040778)
chr7 (1-261)||(15290245-15290499)
chr7 (49-254)||(12099060-12099263)
chr7 (1-204)||(12082028-12082227)
chr7 (115-195)||(2757370-2757448)
[»] chr5 (3 HSPs)
chr5 (1-261)||(42911084-42911341)
chr5 (4-261)||(29106969-29107224)
chr5 (170-260)||(38997230-38997320)
[»] chr2 (1 HSPs)
chr2 (4-261)||(8539199-8539456)
[»] chr3 (2 HSPs)
chr3 (1-133)||(51302174-51302306)
chr3 (225-261)||(51302308-51302344)
[»] chr6 (2 HSPs)
chr6 (170-261)||(2100291-2100379)
chr6 (127-177)||(2100723-2100771)


Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 14173950 - 14174208
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14173950 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa 14174049  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14174050 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 14174147  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  14174148 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 14174208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 14178704 - 14178962
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  14178704 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa 14178803  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14178804 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 14178901  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  14178902 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 14178962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 28611920 - 28611662
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28611920 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa 28611821  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28611820 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 28611723  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||    
T  28611722 gtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgttca 28611662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 28607158 - 28606902
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28607158 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa 28607059  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28607058 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgag--agagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 28606961  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgtt 259  Q
    |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||    
T  28606960 gtttgtcccgtggtttttccctcggtattagagggtttttcacgttaaatattggtgtt 28606902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 44161599 - 44161855
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44161599 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa 44161698  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||| ||||||||||||||||||||||||||||||||||   ||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  44161699 gtaggtcttacgggaaacactatattgtatctcttgtgtgtgt--aagagagtggagaga--attgtaatattctttaatatagtggaatatttttcgga 44161794  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  44161795 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 44161855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 11104482 - 11104738
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |||||| |    
T  11104482 tagagtgttgagtaaatccagagagtgtaggaaaaatacaccgggtggatatcatctctataacttctaggtgttataaaataatagcatttgaatagga 11104581  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    || ||||||||||||||||||||||||||||||||   ||||||  ||||||||||||||||||||||||||||||  |||| |||||||||||||||||    
T  11104582 gtgggtctcacgggaaacactatattgtatctctt---tgtgtgtaagagagtggagagaatattgtaatattcttagatatggtggaatatttttcgga 11104678  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| || |||||  ||||||||| ||||| | ||||||||||||||||||    
T  11104679 gtttgtcccgtggt-ttaccctcgatattagaggattttctatgttaaatattggtgttca 11104738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 50 - 260
Target Start/End: Complemental strand, 48827000 - 48826793
Alignment:
Q  50 tatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagaga 149  Q
    |||||||||||||||||||||||||||||| |||||||||||  ||||| |||   ||||||||||||||||||||||||||||||||||||||   |||    
T  48827000 tatcatctctataacttctaggtgctataaaataatagcattcaaataggagtgaatctcacgggaaacactatattgtatctcttgtgtgtgt--aaga 48826903  T
Q  150 gagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaa 249  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||| ||||||||||||||    
T  48826902 gagcgaagagaatattgtaatattctttaatatagtggaatatttttcggag-ttgtcccgtgatttttccctcggtattagaggattttccacgttaaa 48826804  T
Q  250 tattggtgttc 260  Q
    |||||||||||    
T  48826803 tattggtgttc 48826793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 155 - 256
Target Start/End: Complemental strand, 48708256 - 48708155
Alignment:
Q  155 gagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattg 254  Q
    ||||||||||||||||||| ||||||||| || ||||||||| |||||||||| |||||| |||| || ||||||| || ||||| || |||||||||||    
T  48708256 gagagaatattgtaatattttttaatataatgaaatattttttggagtttgtcacgtggtttttctcttagtattatagagtttttcatgttaaatattg 48708157  T
Q  255 gt 256  Q
    ||    
T  48708156 gt 48708155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 240
Target Start/End: Complemental strand, 24726442 - 24726288
Alignment:
Q  81 ataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaat 180  Q
    |||||| |||| |||||| ||| |||||||||| ||||| |||| |||||||| |||  ||     ||||| ||||||||||||| | || |||||||||    
T  24726442 ataataacatttgaataggagt-ggtctcacggaaaacaatatagtgtatctcgtgtcggta----agagaatggagagaatattattatgttctttaat 24726348  T
Q  181 atagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttc 240  Q
    ||| ||||||||||||| ||||||||| |||||  |||||||   ||||||| |||||||    
T  24726347 ataatggaatatttttcagagtttgtctcgtggcttttcccttgatattagatggttttc 24726288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 12930689 - 12930947
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  12930689 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaa 12930788  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12930789 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 12930886  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  12930887 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 12930947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 12935435 - 12935693
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||    
T  12935435 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagagtaaaa 12935534  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12935535 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 12935632  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  12935633 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 12935693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 259
Target Start/End: Complemental strand, 26505063 - 26504945
Alignment:
Q  139 tgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttt 238  Q
    ||||||| ||||||| || |||||||||||||||| |||| |||||| |||||||||| ||||||||| | ||||| ||| |||   ||||||| ||| |    
T  26505063 tgtgtgaaagagagttgaaagaatattgtaatattttttattatagttgaatattttttggagtttgtactgtggt-tttgccttgttattagacggtat 26504965  T
Q  239 tccacgttaaatattggtgtt 259  Q
    | |||||||||||||| ||||    
T  26504964 t-cacgttaaatattgatgtt 26504945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 261
Target Start/End: Original strand, 15588948 - 15589060
Alignment:
Q  149 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa 248  Q
    |||||||||| ||| |||||||||| ||| ||| |||| |||||||||  ||||||||| | || | |||| |||| || ||||||||||| ||   |||    
T  15588948 agagtggagaaaatgttgtaatattgtttgataaagtgaaatattttttagagtttgtcacttgatttttctctcattaatagagggtttttcaaaataa 15589047  T
Q  249 atattggtgttca 261  Q
    |||||| ||||||    
T  15589048 atattgatgttca 15589060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 34907152 - 34907410
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  34907152 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaataaaa 34907251  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34907252 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgt--gagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 34907349  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  34907350 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 34907410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 37040778 - 37040520
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  37040778 tagagtgttgagtaaatccagagagtgtgggaaaaatacatcgggtgggtatcatctctataacttctaggtgctataaaataatagcattagaatagaa 37040679  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37040678 gtaggtctcacggaaaacactatattgtatctcttgtgtgtgtgag--agagtggagaaaatattgtaatattctttaatatagtggaatatttttcgga 37040581  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  37040580 gtttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 37040520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 15290245 - 15290499
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||  |||||||| |||||| |    
T  15290245 tagagtgttgactaaatccagaaagtgtgg-aaaaatacaccgggtgggtatcatctctataacttctaggtgctgaaata--atagcattcgaatagga 15290341  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    || |||||||||| ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||| || ||| |||    
T  15290342 gtgggtctcacgg-aaacactatattgtatctcttgtgtgtgtaagag--agtggagagaatattgtaatattcttaaatatagtggaaaatcttttgga 15290438  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| | | |||| |||||||||||||||||||||||||||||||||||||    
T  15290439 gtttgtcccgtggtttatacctcggtattagagggttttccacgttaaatattggtgttca 15290499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 254
Target Start/End: Original strand, 12099060 - 12099263
Alignment:
Q  49 gtatcatctctataacttctaggtgctataatataatagcattagaatagaagtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagag 148  Q
    |||||||||||||||||| |||||| ||||| |||||| |||| |||||| |||  |||||||  ||||||| ||||||| ||||||||| |||| ||||    
T  12099060 gtatcatctctataacttttaggtgttataaaataatatcatttgaataggagtgagtctcactagaaacacaatattgtgtctcttgtgcgtgtaagag 12099159  T
Q  149 agagtggagagaatattgtaatattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaa 248  Q
      ||||||||||||||||||||||||||||||||||| |||  |||||||||||||||||| |||| ||||| ||   ||||||||||||| ||||| ||    
T  12099160 --agtggagagaatattgtaatattctttaatatagttgaaattttttcggagtttgtcccttggtttttccttcgtcattagagggtttttcacgtaaa 12099257  T
Q  249 atattg 254  Q
    ||||||    
T  12099258 atattg 12099263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 12082028 - 12082227
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    |||||||||| ||||||||||| |  | |||||||||| | ||||| ||||| |||||||||||||||||| ||||||| |||||| |||| |||||| |    
T  12082028 tagagtgttgggtaaatccagaaaaag-gggaaaaatatatcgggtaggtattatctctataacttctaggcgctataaaataataacatttgaatagga 12082126  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |   ||||||   |||||||||||||||||||||| |  ||||   |||||||||||| ||||||||||||||| ||||||||||||||||||||| |||    
T  12082127 gcgagtctcattagaaacactatattgtatctcttttccgtgt--aagagagtggagaaaatattgtaatattc-ttaatatagtggaatattttttgga 12082223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 2757448 - 2757370
Alignment:
Q  115 aaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttt 195  Q
    |||||||||||||||||||||| |||||  | ||||||||||||||||| || |||||| || ||||||||||||||||||    
T  2757448 aaacactatattgtatctcttgagtgtg--aaagagagtggagagaatagtgcaatatttttaaatatagtggaatatttt 2757370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 42911341 - 42911084
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  42911341 tagagtgttgagtaaatccagagagtgtggaaaaaatacactgggtgggtatcatctctataacttcttggtgctataaaataatagcattagaatagaa 42911242  T
Q  101 gtaggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  42911241 gtaggtctcaagggaaacactatattgtatcttttgtgtgtgtgag--agagtggagagaatattgtaatattcttaaatatagtggaata-ttttcgga 42911145  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||    
T  42911144 gtttgtcccgtggtttttccctcggtattagagggttttccatgttaaatattggtgttca 42911084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 261
Target Start/End: Complemental strand, 29107224 - 29106969
Alignment:
Q  4 agtgttgagtaaatccagagagtgtgggaaaaatacaccgggtggg-tatcatctctataacttctaggtgctataatataatagcattagaatagaagt 102  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  29107224 agtgttgagtaaatccagagagtgtgggaaaaatacattgggtggggtatcatctttataacttctaggtgctaaaaaataatagcattagaatagaagt 29107125  T
Q  103 aggtctcacgggaaacactatattgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcggagt 202  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29107124 aggtctcacgggaaacactat-ttgtatctcttgtgtgtgtaagagag--tggagagaatattgtaatattctttaatatagtggaatatttttcggagt 29107028  T
Q  203 ttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  29107027 ttgtcccgtggtttttccctcggtattagagggttttccacgttaaatattggtgttca 29106969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 38997320 - 38997230
Alignment:
Q  170 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttc 260  Q
    |||||||||||||| |||| ||||||| |||||||||||||| || ||||  ||  ||||||||||||||| |||| |||||||| |||||    
T  38997320 tattctttaatataatggattattttttggagtttgtcccgtagtttttcgttcgatattagagggttttcgacgtaaaatattgctgttc 38997230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 4 - 261
Target Start/End: Original strand, 8539199 - 8539456
Alignment:
Q  4 agtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaagta 103  Q
    |||||| ||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||| ||||||||| | |||||| |||     
T  8539199 agtgttcagtaaattcagagagtgtgggaaaaatacatcggatgggtatcatctctataacttttaggtgctgtaaaataatagcaatcgaataggagtg 8539298  T
Q  104 ggtctcacgggaaacactata---ttgtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattctttaatatagtggaatatttttcgga 200  Q
    |||||||||| ||||||||||   ||||||||||||||||||| ||||  |||||||| ||||||||||||||||| ||||||||||||||| |||||||    
T  8539299 ggtctcacgg-aaacactataatattgtatctcttgtgtgtgtaagag--agtggagataatattgtaatattcttaaatatagtggaatatctttcgga 8539395  T
Q  201 gtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||||||    
T  8539396 gtttgtcccgtgatttttccctcggtattagagggttttccacgttaaatattgatgttca 8539456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 51302174 - 51302306
Alignment:
Q  1 tagagtgttgagtaaatccagagagtgtgggaaaaatacaccgggtgggtatcatctctataacttctaggtgctataatataatagcattagaatagaa 100  Q
    |||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||| |    
T  51302174 tagagtattgagtaaatccagagagtgtggataaaatacaccgggtgggaatcatctctataacttctaggtgctataaaacaattgcattcgaatagga 51302273  T
Q  101 gtaggtctcacgggaaacactatattgtatctc 133  Q
    || ||||||||||||||||||||||||||||||    
T  51302274 gtgggtctcacgggaaacactatattgtatctc 51302306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 225 - 261
Target Start/End: Original strand, 51302308 - 51302344
Alignment:
Q  225 gtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||||||||||||||||||||||||||    
T  51302308 gtattagagggttttccacgttaaatattggtgttca 51302344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 2100379 - 2100291
Alignment:
Q  170 tattctttaatatagtggaatatttttcggagtttgtcccgtggtctttccctcagtattagagggttttccacgttaaatattggtgttca 261  Q
    |||||||||||||||||||||||||||||||||||| |||   || |||| |||| ||||| |||||||||||| |||||||||| ||||||    
T  2100379 tattctttaatatagtggaatatttttcggagtttgcccc---gtttttcgctcattattaaagggttttccaccttaaatattgatgttca 2100291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 2100771 - 2100723
Alignment:
Q  127 gtatctcttgtgtgtgtgagagagagtggagagaatattgtaatattcttt 177  Q
    ||||||||||||| ||| ||||||  |||||||||||||||||||||||||    
T  2100771 gtatctcttgtgtatgtaagagag--tggagagaatattgtaatattcttt 2100723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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