View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_2 (Length: 474)
Name: NF8488_low_2
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 65 - 464
Target Start/End: Original strand, 7384066 - 7384465
Alignment:
| Q |
65 |
cgtcaataagtttgatagaaatatggtatttgatagagcattatgactctctttgattcatttagagaacaatcaaatctcatcttatttagtaggataa |
164 |
Q |
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| T |
7384066 |
cgtcaatgagtttgatagaaatatgatatttgatagagcattatgactctctttgattcatctaaagaacaatcaagtctcgtcttatttagtgggataa |
7384165 |
T |
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| Q |
165 |
ggcttaactattcttgtttctacttattgatagggtaacttttgatgcagttactagacccatgatttggagggtccgtaaaagtgcagttattagtatc |
264 |
Q |
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| T |
7384166 |
gacttaactattcttgtttctacttattgatagggtaacttttgatgcagttactagacctatgatttggagggtccgtaaaagtgcagttattagtatc |
7384265 |
T |
|
| Q |
265 |
ataaataacgccattcagccattgcttgagattattcaaaaaattagacttaagaactatgaatacaaagatacattgttagcacttagcactatgaaga |
364 |
Q |
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| T |
7384266 |
ataaataacgccattcagccattgcttgagactattcaaaaaattagacttaagaactatgaatgcagagatacattgttagcacttagcactgtgaaga |
7384365 |
T |
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| Q |
365 |
agtttttgctttaggattacaaggtttttcttccgtactgttttctatttttaaccaataatatatgttttttatctcttgaattcaggttcatctcact |
464 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7384366 |
agtttttgctttaggattacaaggtttttcttccatactgttttctatttttaaccaataatatatgttttttatctcttgaattcaggttcatatcact |
7384465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 6293487 - 6293451
Alignment:
| Q |
73 |
agtttgatagaaatatggtatttgatagagcattatg |
109 |
Q |
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| T |
6293487 |
agttagatagaaatatggtatatgatagagcattatg |
6293451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 73 - 111
Target Start/End: Complemental strand, 31337655 - 31337617
Alignment:
| Q |
73 |
agtttgatagaaatatggtatttgatagagcattatgac |
111 |
Q |
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| T |
31337655 |
agttggatagaaatatggtatttgatagaacattatgac |
31337617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 42026631 - 42026575
Alignment:
| Q |
73 |
agtttgatagaaatatggtatttgatagagcattatgactctctttgattcatttag |
129 |
Q |
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|||| |||||||||||||||| ||||||| ||||||| | | |||||||||||||| |
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| T |
42026631 |
agttagatagaaatatggtatatgatagaacattatggcgttatttgattcatttag |
42026575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 17028863 - 17028900
Alignment:
| Q |
71 |
taagtttgatagaaatatggtatttgatagagcattat |
108 |
Q |
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|||||| |||||||||||||||||||||||| |||||| |
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| T |
17028863 |
taagttagatagaaatatggtatttgatagaacattat |
17028900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 11733934 - 11733970
Alignment:
| Q |
73 |
agtttgatagaaatatggtatttgatagagcattatg |
109 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
11733934 |
agttagatagaaatatggtatgtgatagagcattatg |
11733970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 29209270 - 29209234
Alignment:
| Q |
73 |
agtttgatagaaatatggtatttgatagagcattatg |
109 |
Q |
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|||| |||||||||||||||| ||||||||||||||| |
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| T |
29209270 |
agttggatagaaatatggtatatgatagagcattatg |
29209234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 42639115 - 42639079
Alignment:
| Q |
73 |
agtttgatagaaatatggtatttgatagagcattatg |
109 |
Q |
| |
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|||| |||||||||||||||||||||||| ||||||| |
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| T |
42639115 |
agttggatagaaatatggtatttgatagaacattatg |
42639079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 56248364 - 56248328
Alignment:
| Q |
72 |
aagtttgatagaaatatggtatttgatagagcattat |
108 |
Q |
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| T |
56248364 |
aagttagatagaaatatggtatttgatagaacattat |
56248328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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