View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8488_low_20 (Length: 269)
Name: NF8488_low_20
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 30409187 - 30408938
Alignment:
| Q |
1 |
agacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30409187 |
agacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattg |
30409088 |
T |
|
| Q |
101 |
tcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccacattcatgtcgccga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30409087 |
tcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccacattcaagtcgccga |
30408988 |
T |
|
| Q |
201 |
ggatcagtaccttctagtgatgagatatcagaaaatgctgaagccaatga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30408987 |
ggatcagtaccttctagtgatgagatatcagaaaatgctgaagccaatga |
30408938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 30395526 - 30395277
Alignment:
| Q |
1 |
agacctcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattg |
100 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
30395526 |
agaccttacaggatggttataattggagaaaatatggccaaaaacaagtaaaaggcagtgaatatccgagaagctactacaaatgtaatcagtctaattg |
30395427 |
T |
|
| Q |
101 |
tcaggtcaagaaaaaggtggaaagatcacacgatggccacataacagaaattatttacaagggtaatcataaccatgcaaaaccacattcatgtcgccga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||||||||||||||||| ||||| |||| ||| |
|
|
| T |
30395426 |
tcaggtcaggaaaaaggtggaaagatcacatgatggcaacataagagaaattatttacagtggtaatcataaccatgcaaaaccaaattcaagtcgtcga |
30395327 |
T |
|
| Q |
201 |
ggatcagtaccttctagtgatgagatatcagaaaatgctgaagccaatga |
250 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
30395326 |
ggatcagtaccttctagtgatgaaatgtcagaaaatgctgaagccaatga |
30395277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 26332619 - 26332563
Alignment:
| Q |
12 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccg |
68 |
Q |
| |
|
|||||||| ||||||||||||||||| || |||||||| ||||| || ||| ||||| |
|
|
| T |
26332619 |
gatggttacaattggagaaaatatggacagaaacaagtgaaaggaagcgaaaatccg |
26332563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 2056297 - 2056390
Alignment:
| Q |
9 |
gaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
102 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||| || ||||| || || || |||| |||||||| ||||||||||| ||||||| |
|
|
| T |
2056297 |
gaggatggatataattggagaaaatatggccaaaagcaagttaagggtagcgagtaccctcgaagttactacaagtgtactcattcaaattgtc |
2056390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 6 - 102
Target Start/End: Complemental strand, 26967134 - 26967038
Alignment:
| Q |
6 |
tcagaggatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatgtactcattctaattgtc |
102 |
Q |
| |
|
||||| ||||| || ||||||||||||||||| ||||||||||| ||||| |||||| |||| ||||| || || ||||| ||| | ||||||||| |
|
|
| T |
26967134 |
tcagatgatggatacaattggagaaaatatggacaaaaacaagtgaaaggaagtgaaaatccaagaagttattataaatgcacttaccctaattgtc |
26967038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 31615428 - 31615355
Alignment:
| Q |
12 |
gatggttataattggagaaaatatggccaaaaacaagtaaaaggtagtgaatatccgagaagctactacaaatg |
85 |
Q |
| |
|
||||| || |||||| |||||||||| ||||| ||||| || || |||||| |||||||||| ||||||||||| |
|
|
| T |
31615428 |
gatggatacaattggcgaaaatatggacaaaagcaagttaagggaagtgaaaatccgagaagttactacaaatg |
31615355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University