View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_23 (Length: 255)
Name: NF8488_low_23
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_23 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 246437 - 246201
Alignment:
| Q |
19 |
accatgacaagttatcattatgaattttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattgttccttttgcggactatatac |
118 |
Q |
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|||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
246437 |
accatggcaagttatcattatggattttctaaactagatttaaccatgtgttgatgggtttgattatcttcttttgttgttccttttgcggactatatgc |
246338 |
T |
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| Q |
119 |
tttgcaacaaacccctgaatcctaattacatattcatacgaaaagatgttggaaaatgtagtggaattggggttgccggatacacattctaacagtttct |
218 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246337 |
tttgcaatgaacccctgaatcctaattacatattcatacgaaaagatgttggaaaatgtagtggaattggggttgccggatacacattctaacagtttct |
246238 |
T |
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| Q |
219 |
ttaactctcttaagtaagaaagttgcgttctgttatt |
255 |
Q |
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| T |
246237 |
ttaactctcttaagtaagaaagttgcgttctgttatt |
246201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 251952 - 252152
Alignment:
| Q |
19 |
accatgacaagttatcattatgaattttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattgttccttttgcggactatatac |
118 |
Q |
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| T |
251952 |
accatggcaagttatcattatgaattttcaaaaccagatttaacaatgag-------gtttgattatcttcttttgttgttccttttgcagactatatgc |
252044 |
T |
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| Q |
119 |
tttgcaacaaacccctgaatcctaattacatattcatacgaaaagatgttggaaaatgtagtggaa-ttggggttgccggatacacattctaacagtttc |
217 |
Q |
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| T |
252045 |
tttgaaagaaacccctgaatcctaattacatattcatatgaaaagatgctggaaaatgaggtggaattttgggttgccggataagcgttctaacagtttc |
252144 |
T |
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| Q |
218 |
tttaactc |
225 |
Q |
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|| ||||| |
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| T |
252145 |
ttcaactc |
252152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 189
Target Start/End: Original strand, 8814781 - 8814913
Alignment:
| Q |
55 |
gatttaacaatgtgttgatgggtttgattatcttcttttattgttccttttgcggactatatactttgcaacaaacccctgaatcctaattacatattca |
154 |
Q |
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||||||||||||| ||||||||||| ||| ||||||||||||||||| |||| | |||||| ||||| |||||| | | | ||||||||||||||||| |
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| T |
8814781 |
gatttaacaatgt--tgatgggtttgtttagcttcttttattgttcctcttgcaggctatatgctttgtgacaaactcttaagtcctaattacatattca |
8814878 |
T |
|
| Q |
155 |
tacgaaaagatgttggaaaatgtagtggaattggg |
189 |
Q |
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| T |
8814879 |
tatgaaaagatgctggaaaatgagatggaattggg |
8814913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 200
Target Start/End: Complemental strand, 231190 - 231052
Alignment:
| Q |
67 |
tgttgatgggtttgattatcttcttttatt-----gttccttttgcggactatatactttgcaacaaacccctgaatcctaattacatattcatacgaaa |
161 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| | ||| ||||||||||||| ||||||| |||| |
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| T |
231190 |
tgttgatgggtttgattatcttcttttattttattgttccttttgcagactatatgttttgcaacggtctcctaaatcctaattacacattcatatgaaa |
231091 |
T |
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| Q |
162 |
agatgttggaaaatgtagtggaattggggttgccggata |
200 |
Q |
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| T |
231090 |
agatgctggaaaacgaggtggaatttggtttgccggata |
231052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 243
Target Start/End: Complemental strand, 9340166 - 9339962
Alignment:
| Q |
30 |
ttatcattatgaattttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattgttccttttgcggactatatactttgcaacaaa |
129 |
Q |
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|||| |||||||| |||||||||||||| ||||||||| || |||||||||||||||||||| |||||| ||||||| |||||||| || ||||||| |
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| T |
9340166 |
ttattattatgaactttctaaactagatgtaacaatgt--tgttgggtttgattatcttctttcattgttacttttgcagactatatgtttaccaacaaa |
9340069 |
T |
|
| Q |
130 |
cccctgaatcctaattacatattcatacgaaaagatgttggaaaatgtagtggaattggggttgccggatacacattctaacagtttctttaactctctt |
229 |
Q |
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| |||||||| |||||||||| |||||||| ||||||||| || | ||| || |||| ||||| | |||| | || || || ||||||||| |
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| T |
9340068 |
c-------tcctaattgcatattcatatcaaaagatgctggaaaatgaggttgcatttggattgctggataagcgttcttatagatttttaaactctctt |
9339976 |
T |
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| Q |
230 |
aagtaagaaagttg |
243 |
Q |
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| T |
9339975 |
atgtaagaaagttg |
9339962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 186
Target Start/End: Original strand, 9495475 - 9495640
Alignment:
| Q |
20 |
ccatgacaagttatcattatgaattttctaaactagatttaacaatgtgttgatgggtttgattatcttctttta-ttgttccttttgcggactatatac |
118 |
Q |
| |
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|||||||||||||| |||||||| ||||| || |||||||||||| ||||| | ||||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
9495475 |
ccatgacaagttattattatgaagtttctgaaatagatttaacaa--tgttggtttgtttgtttatcttcttttatttgttccttttgcagactatatgt |
9495572 |
T |
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| Q |
119 |
tttgcaacaaacccctgaatcctaattacatattcatacgaaaagatgttggaaaatgtagtggaatt |
186 |
Q |
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|| |||||||| ||| | || | ||||||| |||||| ||| ||||| || |||||| |||||||| |
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| T |
9495573 |
ttaccaacaaactcctaattcgtgattacatgttcatatgaagagatgctgcaaaatgaggtggaatt |
9495640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Complemental strand, 9335345 - 9335294
Alignment:
| Q |
44 |
tttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattg |
97 |
Q |
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|||||||||||||| ||||| ||| ||||| |||||||||||||||||||||| |
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| T |
9335345 |
tttctaaactagatgtaacattgt--tgatgagtttgattatcttcttttattg |
9335294 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 9401966 - 9401917
Alignment:
| Q |
67 |
tgttgatgggtttgattatcttcttttattgttccttttgcggactatat |
116 |
Q |
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|||||||| | ||||| |||||||||||||||| ||||||| |||||||| |
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| T |
9401966 |
tgttgatgagcttgatcatcttcttttattgttacttttgcagactatat |
9401917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Complemental strand, 9432459 - 9432410
Alignment:
| Q |
67 |
tgttgatgggtttgattatcttcttttattgttccttttgcggactatat |
116 |
Q |
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|||||||| | ||||| |||||||||||||||| ||||||| |||||||| |
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| T |
9432459 |
tgttgatgagcttgatcatcttcttttattgttacttttgcagactatat |
9432410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 186
Target Start/End: Original strand, 9627160 - 9627236
Alignment:
| Q |
110 |
actatatactttgcaacaaacccctgaatcctaattacatattcatacgaaaagatgttggaaaatgtagtggaatt |
186 |
Q |
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|||||||| || |||||||| ||| | |||||||||||||||| || ||||| ||| | ||||||| ||||||||| |
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| T |
9627160 |
actatatatttatcaacaaactcctaattcctaattacatattcgtatgaaaatatgctagaaaatgaagtggaatt |
9627236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 29 - 107
Target Start/End: Complemental strand, 7046514 - 7046438
Alignment:
| Q |
29 |
gttatcattatgaattttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattgttccttttgc |
107 |
Q |
| |
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||||| |||||||| |||||||||||||| | ||||||| || |||| |||||||||||||||||||||| ||||||| |
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| T |
7046514 |
gttattattatgaagtttctaaactagatatgacaatgt--tgctgggcttgattatcttcttttattgttacttttgc |
7046438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 9159841 - 9159907
Alignment:
| Q |
44 |
tttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattgttccttttgcggact |
112 |
Q |
| |
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|||||||||||||| ||||||||| ||||| | |||||||||||||||||||||| ||||||| |||| |
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| T |
9159841 |
tttctaaactagatgtaacaatgt--tgatgagcttgattatcttcttttattgttacttttgcagact |
9159907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 7040979 - 7040933
Alignment:
| Q |
67 |
tgttgatgggtttgattatcttcttttattgttccttttgcggacta |
113 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||| ||||| |
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| T |
7040979 |
tgttgatgggattgattatcttcttttattgttacttttgcagacta |
7040933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 9170587 - 9170528
Alignment:
| Q |
44 |
tttctaaactagatttaacaatgtgttgatgggtttgattatcttcttttattgttcctttt |
105 |
Q |
| |
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|||||||||||||| ||||||||| ||||| | |||||||||||||||||||||| ||||| |
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| T |
9170587 |
tttctaaactagatgtaacaatgt--tgatgagcttgattatcttcttttattgttactttt |
9170528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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