View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_3 (Length: 455)
Name: NF8488_low_3
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 4 - 438
Target Start/End: Complemental strand, 3431786 - 3431338
Alignment:
| Q |
4 |
cccctttgctagtgatggtcgttgttgacttgttgtggatccacctccaatccatcttgccagtttgtcgtggccatgccctatgtttcggatcctccct |
103 |
Q |
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| T |
3431786 |
cccctttgctagcgatggtcgttgttgacttgttgtggatccacctccaatccatcttgccagtttgttgtggccatgccctatgtttcggatcctccct |
3431687 |
T |
|
| Q |
104 |
caa--ccaacggacaataaactttgacactaatgatggatagtgagagatctagtttcacagtttgttaat-----ctgtctcaccttatgagaacagtt |
196 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3431686 |
caataccaacggacaataaactttgacactaatgatggatagtgagagatccagtttcacagtttgttaatggtatctgtctcaccttatgagaacagtt |
3431587 |
T |
|
| Q |
197 |
tgctacgatggtagtttcaaaatggttaaccaaa------tataaaagtttacttcacttcgttagaggtttagtaaaaattgtgtccaatttggttcag |
290 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3431586 |
agctacgatggtagtttcaaaatggttaaccaaacaaaaatataaaagtttacttcacttcgttagaggtttagtaaaaattgtgtccaatttggttcag |
3431487 |
T |
|
| Q |
291 |
ttcaat-ctcttatttcagtgaataaaccatggtcgtacttaaacgaattctttcttttctttagaaattcgaatcgagcatgatgcaatttcagacaaa |
389 |
Q |
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|||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3431486 |
ttcaattctcttatttcagtgaataaaccatgatcatacttaaacgaattctttcttttctttagaaattcgaattgagcatgatgcaatttcagacaaa |
3431387 |
T |
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| Q |
390 |
agttaggagtactcgattattttataaaagcagaaaaccaataccatac |
438 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3431386 |
agttaggagtactcgattattttataatagcagaaaaccaataccatac |
3431338 |
T |
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