View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_36 (Length: 204)
Name: NF8488_low_36
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 33107930 - 33107727
Alignment:
| Q |
1 |
atccagaaaagcactctcagttaaacttcattacaactagataaaatgcatgtttccttatcaatgtgacctaattattcatatataataacataataat |
100 |
Q |
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| T |
33107930 |
atccagaaaagcattctcagtcaaacttcattacaactagataaaatgcatgtttccttatcaatgtgaccaaattattcatatataataacataataat |
33107831 |
T |
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| Q |
101 |
catatcaaatgatgattcaaaagaaaggatgaaccatacatgaagcatacgccaaggtgaacctctccaagcaccatgatcaggaacagagacctgagac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33107830 |
catatcaaatgatgattcaaaagaaaggatgaaccatacatgaagcatacgccaaggtgaacctctccaagcaccatgatcaggaacagagacctgagac |
33107731 |
T |
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| Q |
201 |
acta |
204 |
Q |
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|||| |
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| T |
33107730 |
acta |
33107727 |
T |
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