View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8488_low_4 (Length: 452)

Name: NF8488_low_4
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8488_low_4
NF8488_low_4
[»] chr5 (2 HSPs)
chr5 (20-390)||(26354885-26355255)
chr5 (20-390)||(9814827-9815194)
[»] chr3 (24 HSPs)
chr3 (19-382)||(19950922-19951282)
chr3 (20-390)||(19812070-19812437)
chr3 (26-390)||(19989312-19989676)
chr3 (20-390)||(19838174-19838553)
chr3 (20-390)||(19818347-19818714)
chr3 (23-180)||(19848990-19849147)
chr3 (23-180)||(20036564-20036721)
chr3 (20-187)||(20046116-20046280)
chr3 (245-390)||(19955865-19956010)
chr3 (20-180)||(19858072-19858232)
chr3 (20-192)||(19956072-19956244)
chr3 (20-185)||(26646999-26647161)
chr3 (20-177)||(26653155-26653309)
chr3 (20-160)||(19853532-19853672)
chr3 (20-180)||(24839932-24840092)
chr3 (283-390)||(19853302-19853409)
chr3 (20-162)||(20016159-20016301)
chr3 (20-180)||(19943720-19943876)
chr3 (38-170)||(30914653-30914785)
chr3 (20-81)||(19971710-19971771)
chr3 (283-390)||(20016420-20016527)
chr3 (245-390)||(20045913-20046058)
chr3 (283-380)||(20036827-20036924)
chr3 (283-375)||(19848792-19848884)
[»] chr1 (1 HSPs)
chr1 (20-390)||(1717004-1717371)
[»] chr8 (5 HSPs)
chr8 (20-180)||(22689613-22689773)
chr8 (23-182)||(11564095-11564254)
chr8 (21-160)||(22685642-22685778)
chr8 (100-185)||(22652126-22652211)
chr8 (23-81)||(22651854-22651912)
[»] chr4 (2 HSPs)
chr4 (34-183)||(6398258-6398404)
chr4 (97-189)||(6397773-6397865)
[»] chr7 (3 HSPs)
chr7 (34-146)||(12581426-12581535)
chr7 (34-83)||(12497303-12497352)
chr7 (34-83)||(12521168-12521217)


Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 26354885 - 26355255
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354885 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 26354984  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaag 219  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26354985 aagcaacaatgaatgcttcatgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaag 26355084  T
Q  220 ttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgaga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  26355085 ttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccaaga 26355184  T
Q  320 accataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26355185 accataacatcctccaaacctaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 26355255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 9815194 - 9814827
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||     ||||   ||  |||||||| ||||| ||||    
T  9815194 gccaaagcaatagaatttcctctagcaagatgaatagcaatagaaaacaaagaacttttcaccaaag---atttatgagttaaaacaaagattgacaacc 9815098  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaag 219  Q
    | | | ||||||| ||||| || |||| |||||||||||| || ||||||| ||||||||||  |||     | |  | ||   | ||| |||    |||    
T  9815097 acgtagcaatgaacgcttcatgctcaatttcactacctttgtcgatgaaaaaatccatccattttgacgcggtagcgtgacacctgttactctccccaag 9814998  T
Q  220 ttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgaga 319  Q
    || || ||| |||   |||| ||||| ||||||| |||||||||| ||| |||||||||    ||||||||||||||| |||||||| |||||||| | |    
T  9814997 tttctgtctagcaagaatcaacttctcttccacctctctcatttcccggcctttaacatctatgaaaataggatcaccgatgacaggataaccccccaaa 9814898  T
Q  320 accataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |||||||||    
T  9814897 accataacatcctccaaactaatcgtcgcctcaccaaacggaaacacaaatgtattcgtcttacaacacca 9814827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 19951282 - 19950922
Alignment:
Q  19 agccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataac 118  Q
    |||||||||||||| |||||||||||||||||||||||||||||| | | || ||||  |||||||  |  ||| | ||||||||||||||| ||| |||    
T  19951282 agccaaagcaataggatttcctctagcaagatgaatagcaataggtagcgaataactcctcaccaattt--attat-taggaaaaacaaaaagtgacaac 19951186  T
Q  119 caagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaa 218  Q
    |||| ||||| ||| ||||| ||||||| |||||||||||||||  |||||| |||||||||||||| |  ||| | | ||||||||||||||||   ||    
T  19951185 caagtaacaaggaaggcttcatgttcaatttcactacctttatcagtgaaaatatccatccataatgttgctctagccatacctgttttagtcttagaaa 19951086  T
Q  219 gttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgag 318  Q
    ||  || ||||||| |||| | ||| | ||| ||| || |||||||| | |||| ||   |   ||||| |||||||||||  |||||||||||||| |     
T  19951085 gtgtctgtcttgcaatgatgagcttttcttcaacctctttcatttcttgatcttgaagtgtaatgaaaacaggatcaccaagaacagggtaaccccccaa 19950986  T
Q  319 aaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 382  Q
    ||||||||||||||||||| | |  || ||||||||||| ||||||||||||||||| ||||||    
T  19950985 aaccataacatcctccaaagtgatagttgcctcaccaaatggaaacacaaatgtattggtctca 19950922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 19812437 - 19812070
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| ||  |||||||||||| ||||||| || |||||||||||  |||||||||| ||  ||||   |||||||||||||||||| ||||    
T  19812437 gccaaagcaataggataccctctagcaagaagaatagcgatcggaaacaaagactttttcaccaa-at--atttatgaggaaaaacaaaaattgacaacc 19812341  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaag 219  Q
    ||| | |||  |||||||| ||||||| ||||||||||||| | | ||||| ||  ||||||  |||| |  | | ||||||| ||||| |||    | |    
T  19812340 aagtagcaagaaatgcttcatgttcaatttcactacctttaccaacgaaaatattgatccattttgatgtggtagccttaccttttttactctgccaagg 19812241  T
Q  220 ttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgaga 319  Q
    || |  |||||||  ||| | ||||||||||||| ||||||||||| |||||| ||| || |  ||||||||||||||||||| |||||||||||| | |    
T  19812240 tttccgtcttgcaaggatgagcttcttttccacctctctcatttcttggtcttgaactttggtaaaaataggatcaccaatgatagggtaaccccccaaa 19812141  T
Q  320 accataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    ||||||| |||||||||| | |  || || |||||||| ||||| ||||| || |||||||||||||||||    
T  19812140 accataatatcctccaaagtgatagttgcttcaccaaatggaaaaacaaaggtgttagtctcacaacacca 19812070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 390
Target Start/End: Complemental strand, 19989676 - 19989312
Alignment:
Q  26 gcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttcta-ggaaaaacaaaaattgataaccaagca 124  Q
    ||||||| |||||||||||||||||||||||||| | |||| |||||||| ||||| |||| |  |||| || |||  |||||||||||| ||||||| |    
T  19989676 gcaataggatttcctctagcaagatgaatagcaacacgaaagaaagaactattcac-aacacgacttttataaggatgaacaaaaattgacaaccaagta 19989578  T
Q  125 acaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaagttcct 224  Q
     |||  |||||||| ||||||| |||| |||||||||| |||||||||||||||||||    | |||| |  ||| |||  |||||||| | ||||| ||    
T  19989577 gcaagaaatgcttcatgttcaagttcattacctttatcaatgaaaacatccatccatacccttgttctagcattagctgacttagtcttataaagttgct 19989478  T
Q  225 ttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccat 324  Q
     |||| ||  |||||  | |||||||||| || |||||||| |||||| ||   |   ||||| |||||||||||  | |||||||||||| | ||||||    
T  19989477 gtctttcaaggatcaattccttttccacctctttcatttcttggtcttgaagtgtaatgaaaacaggatcaccaagaatagggtaaccccctaaaaccat 19989378  T
Q  325 aacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    |||||| |||||| | |  || ||||||||||| ||||| |||||||| || ||||||||||||||    
T  19989377 aacatcttccaaagtgatagttgcctcaccaaatggaaaaacaaatgtgtttgtctcacaacacca 19989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 19838553 - 19838174
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcac-caacatgcattttctaggaaaaacaaaaattgataac 118  Q
    |||||||||||||||||||||||||||||||||| | |||| ||||||||| | |||||||| ||| | |  ||   ||||||||||||||||||| |||    
T  19838553 gccaaagcaatagaatttcctctagcaagatgaacaacaattggaaacaaaaagcttttcacgcaaga-gtgttgattaggaaaaacaaaaattgacaac 19838455  T
Q  119 caagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggc---ttacct----gttttag-t 210  Q
    |||| | | |  || ||||| ||||||| ||| ||||||||||| ||||||| ||||||||||| |||| |||| | |   ||||||    |||| |  |    
T  19838454 caagtagctagaaaagcttcatgttcaatttcgctacctttatcgatgaaaatatccatccatagtgatgttctagacgaattacctccttgtttcacat 19838355  T
Q  211 ctttt-taagttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggta 309  Q
    |  |  |||||| ||||  || |  |||||  || ||||||||| ||||||||||| ||||||| || |  | ||||| || ||||||||||||||||||    
T  19838354 cagtagtaagttgctttaatgtaaggatcaatttgttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggta 19838255  T
Q  310 acccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    |||||| | |||||| ||||| |||||| | |  || ||||||||||| ||||||||||||||||| |||||||| |||||    
T  19838254 accccccaaaaccatgacatcttccaaagtgattgttgcctcaccaaatggaaacacaaatgtattggtctcacagcacca 19838174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 19818714 - 19818347
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| ||| ||||||||||||| || ||||| |||||||| | || |||||||||| || | | |   |||||||||||||||||||||||    
T  19818714 gccaaagcaataggattccctctagcaagattaacagcaacaggaaacagataatttttcaccaa-attcttatg--aggaaaaacaaaaattgataacc 19818618  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaag 219  Q
    ||| | |||  || ||||| ||||||| |||  |||||||| | || ||||  |||||||||  |||| |  | | |||| ||   |||||||    | |    
T  19818617 aagtagcaagaaaagcttcatgttcaatttcggtacctttaccaataaaaatttccatccattttgatgtggtagccttagcttgattagtctgccaagg 19818518  T
Q  220 ttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgaga 319  Q
    || || ||||||| |||| | ||||||||| ||| ||||||||||| | |||||||| ||   ||||| |||||||||||||| ||| |||||||| | |    
T  19818517 tttctgtcttgcaatgatgagcttcttttcaacctctctcatttcttgatctttaactttgatgaaaacaggatcaccaatgataggataaccccccaaa 19818418  T
Q  320 accataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    || || |||||||||||| | |  || ||||||||||| ||||| ||||| || |||||||||||||||||    
T  19818417 actatgacatcctccaaagtgatagttgcctcaccaaatggaaaaacaaaggtgttagtctcacaacacca 19818347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 19849147 - 19848990
Alignment:
Q  23 aaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-aggaaaaacaaaaattgataaccaa 121  Q
    |||||||||  |||||||||||||||||  | |||||||||||||||||||||||||||||| ||   |||| | |||||||||||||| ||| ||||||    
T  19849147 aaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaa-atagtttttatgaggaaaaacaaaaagtgacaaccaa 19849049  T
Q  122 gcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 180  Q
    | | |||  |||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  19849048 gtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 19848990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 180
Target Start/End: Original strand, 20036564 - 20036721
Alignment:
Q  23 aaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-aggaaaaacaaaaattgataaccaa 121  Q
    |||||||||  |||||||||||||||||  | |||||||||||||||||||||||||||||| ||   |||| | |||||||||||||| ||| ||||||    
T  20036564 aaagcaatacgatttcctctagcaagatatacagcaataggaaacaaagaacttttcaccaa-atagtttttatgaggaaaaacaaaaagtgacaaccaa 20036662  T
Q  122 gcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 180  Q
    | | |||  |||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  20036663 gtagcaagaaatgcttcatgttcaatttcactacctttatcaatgaaaatatccatcca 20036721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 20046280 - 20046116
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttct-aggaaaaacaaaaattgataac 118  Q
    ||||||||||| | ||||||||||||||||| ||||||||||| ||||||| || |||||||||  ||   |||| | |||||||||||||||||| |||    
T  20046280 gccaaagcaattggatttcctctagcaagattaatagcaatagaaaacaaacaatttttcaccat-at---ttttatgaggaaaaacaaaaattgacaac 20046185  T
Q  119 caagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgat 187  Q
    |||| |  || ||| ||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||    
T  20046184 caagtagtaaggaaggcttcgtgttcaatttcactacctttatcgatgaacatatccatccataatgat 20046116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 245 - 390
Target Start/End: Complemental strand, 19956010 - 19955865
Alignment:
Q  245 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccg 344  Q
    ||||||||| ||||||||||| ||||||| || |  | ||||| || |||||||||||||||||||||||| | |||||| ||||| |||||| | |  |    
T  19956010 ttttccacctctctcatttcttggtctttgacttcggtgaaaacagaatcaccaatgacagggtaaccccccaaaaccatgacatcttccaaagtgattg 19955911  T
Q  345 tcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    | ||||||||||| ||||||||||||||||| ||||||||||||||    
T  19955910 ttgcctcaccaaatggaaacacaaatgtatttgtctcacaacacca 19955865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 19858232 - 19858072
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    |||||||| |||| ||||||||||||||||  ||||||||||||||||||||| ||||||||    | | || |  ||||||||||||||||||| ||||    
T  19858232 gccaaagcgatagtatttcctctagcaagaccaatagcaataggaaacaaagatcttttcacattaaagtatctattaggaaaaacaaaaattgacaacc 19858133  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 180  Q
    ||| | |||  |||||||| || |||| ||||||||||||||| ||||||| |||||||||    
T  19858132 aagtagcaagaaatgcttcatgctcaatttcactacctttatcgatgaaaatatccatcca 19858072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19956244 - 19956072
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| |||||||||||||||||||| | |||||||||||||| ||||||||||  |     ||||   ||| |||||||||||||| ||||    
T  19956244 gccaaagcaataggatttcctctagcaagatgaacaacaataggaaacaaataacttttcacggaagaatatttatgagggaaaacaaaaattgacaacc 19956145  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattct 192  Q
    ||| | |||  || ||||| ||||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||    
T  19956144 aagtagcaagaaaagcttcatgttcaatttcactacctttatcaatgaaaatatccatccatagtgatgttct 19956072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 26647161 - 26646999
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||| | ||| |||||||||||||||| |||||||||||||||| ||||||||||||| ||  |  |   |||||||||| ||| ||| ||||    
T  26647161 gccaaagcaattggattccctctagcaagatgaacagcaataggaaacaaacaacttttcaccaa-atttagat--gaggaaaaacataaactgacaacc 26647065  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatg 185  Q
    ||| |  || ||||||||| ||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  26647064 aagtagaaaggaatgcttcatgttcaatttcactacctttatccatgaaactatcgatccataatg 26646999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 26653309 - 26653155
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||| |  || | | |   |||||||||||||||||| ||||    
T  26653309 gccaaagcaataggatttcctctagcaagatgaacagcaatagaaaacaaagaacttttcacta--attc-tatatgaggaaaaacaaaaattgacaacc 26653213  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccat 177  Q
    ||||  ||| |||||| || ||||||| |||||||||||  || ||||||| ||||||    
T  26653212 aagctgcaaggaatgcatcatgttcaatttcactaccttagtcaatgaaaatatccat 26653155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 19853672 - 19853532
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| ||| |||||||||||| |||||||||||||||||||||| |||||||| |  | | || |   ||||||||||||||| || ||||    
T  19853672 gccaaagcaatagtattacctctagcaagacgaatagcaataggaaacaaagatcttttcacaataaagtatctatgaggaaaaacaaaaatagacaacc 19853573  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactaccttta 160  Q
    ||| | |||  |||||||| ||||||| |||||||||||||    
T  19853572 aagtagcaagaaatgcttcatgttcaatttcactaccttta 19853532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 24839932 - 24840092
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||| ||||| ||| |||||||| ||||||| ||||| |||||||||||||| |||||| |    | ||||   ||| |||||||||||||| ||||    
T  24839932 gccaaagaaataggattccctctagctagatgaacagcaacaggaaacaaagaacatttcactagagagtatttatgagggaaaacaaaaattgacaacc 24840031  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 180  Q
    ||| | |||  |||||||| || |||||||||||||||||||| ||||||| |||||||||    
T  24840032 aagtagcaagaaatgcttcatgctcaacttcactacctttatcgatgaaaatatccatcca 24840092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 283 - 390
Target Start/End: Complemental strand, 19853409 - 19853302
Alignment:
Q  283 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 382  Q
    |||||||||||||||||||| |||||||||||| | ||||||||||||||||||| | |  || || |||||||| || |||||||||||||| ||||||    
T  19853409 gaaaataggatcaccaatgatagggtaaccccccaaaaccataacatcctccaaagttattgttgcttcaccaaatgggaacacaaatgtattggtctca 19853310  T
Q  383 caacacca 390  Q
     |||||||    
T  19853309 gaacacca 19853302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 20016159 - 20016301
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||||  |   | ||||   ||| |||||||||||||| | ||    
T  20016159 gccaaagcaataggatttcgtctagcaagatgaatagcaatcggaaacaaacaacttttcacggaagagtatttatgagggaaaacaaaaattgacagcc 20016258  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatc 162  Q
    ||| | |||  |||||||| ||||||| |||||||||||||||    
T  20016259 aagtagcaagaaatgcttcatgttcaatttcactacctttatc 20016301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 19943876 - 19943720
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    |||||||| |||| | | |||||||||||||||| ||||||||||||||  |||||||||||||   || || |   ||||||||||||  |||| ||||    
T  19943876 gccaaagccataggaatccctctagcaagatgaacagcaataggaaaca--gaacttttcaccacattgtatctatgaggaaaaacaaa--ttgacaacc 19943781  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 180  Q
    ||| | |||  |||||||| ||||||| ||||||||||||||| ||||||| |||||||||    
T  19943780 aagtagcaagaaatgcttcatgttcaatttcactacctttatcgatgaaaatatccatcca 19943720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 30914785 - 30914653
Alignment:
Q  38 cctctagcaagatgaatag---caataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaatg 134  Q
    |||||||||||||||||||   |||||||||||||| ||||||||||||| ||   |||   ||| |||||||||||||| ||||||| |  || |||||    
T  30914785 cctctagcaagatgaataggcgcaataggaaacaaaaaacttttcaccaa-atc--tttgtgagggaaaacaaaaattgacaaccaagtagtaaggaatg 30914689  T
Q  135 cttcgtgttcaacttcactacctttatccatgaaaa 170  Q
    |||| ||||||| ||||||| ||||||| |||||||    
T  30914688 cttcatgttcaatttcactaactttatcaatgaaaa 30914653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 19971771 - 19971710
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcac 81  Q
    ||||||||||||| ||| |||||| | | |||||||||||||||||||||||||||||||||    
T  19971771 gccaaagcaatagtattgcctctaaccaaatgaatagcaataggaaacaaagaacttttcac 19971710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 390
Target Start/End: Original strand, 20016420 - 20016527
Alignment:
Q  283 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctca 382  Q
    ||||| |||||| ||||||||||||||||| || | |||||||| |||||||||| | |  || || ||| |||| ||||||||||||||||| |||| |    
T  20016420 gaaaacaggatcgccaatgacagggtaaccacccaaaaccataatatcctccaaagtgattgtagcttcagcaaatggaaacacaaatgtatttgtctta 20016519  T
Q  383 caacacca 390  Q
     |||||||    
T  20016520 gaacacca 20016527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 390
Target Start/End: Complemental strand, 20046058 - 20045913
Alignment:
Q  245 ttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccg 344  Q
    ||||||||| ||||||||||| |||||||||| || | ||||| | |||| ||||||| ||||||||| || | ||| || | |||||||||  | |  |    
T  20046058 ttttccacctctctcatttcttggtctttaactttggtgaaaacatgatcgccaatgatagggtaacctcccaaaacaatgatatcctccaaggttattg 20045959  T
Q  345 tcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    | | ||||||||| ||||| | ||||||||| || |||||||||||    
T  20045958 ttgtctcaccaaagggaaaaataaatgtatttgtatcacaacacca 20045913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 283 - 380
Target Start/End: Original strand, 20036827 - 20036924
Alignment:
Q  283 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtct 380  Q
    ||||| |||||||||||  ||||| ||||| || |||||||| | |||||||||| | || || || |||||||| | ||||||||||||||| ||||    
T  20036827 gaaaacaggatcaccaagaacaggataacctcctagaaccatgatatcctccaaaatgactgttgcttcaccaaaggaaaacacaaatgtatttgtct 20036924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 375
Target Start/End: Complemental strand, 19848884 - 19848792
Alignment:
Q  283 gaaaataggatcaccaatgacagggtaacccccgagaaccataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtatt 375  Q
    ||||| |||||||||||  ||||| |||||||| |||||||| | |||||||||| | |  || || |||||||| | ||||||||| |||||    
T  19848884 gaaaacaggatcaccaagaacaggataaccccctagaaccatgatatcctccaaagtgattgttgcttcaccaaaggaaaacacaaaggtatt 19848792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 20 - 390
Target Start/End: Complemental strand, 1717371 - 1717004
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||||||||||   || || |  |||||||||| |||  || ||||    
T  1717371 gccaaagcaataggatttcctctagcaagatgaacagcaataggaaacaaagattttttcaccaaa--gctttatg-aggaaaaacataaaccgacaacc 1717275  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatattcttggcttacctgttttagtctttttaag 219  Q
    ||| | |||  |||||||| ||||||| ||||||||||||||| |  ||||||||||||||||||| | |||| ||| |||||  ||   || | | |||    
T  1717274 aagtagcaagaaatgcttcatgttcaatttcactacctttatcaacaaaaacatccatccataatgttgttctaggcctacctccttgtttcctataaag 1717175  T
Q  220 ttcctttcttgcattgatcatcttcttttccaccactctcatttctcggtctttaacattcgcgaaaataggatcaccaatgacagggtaacccccgaga 319  Q
    ||  | |||||||  |||||  || | ||| | | || |||||||| |||||| ||      |||||| |||||||||||||||||||||| |||| | |    
T  1717174 ttgttctcttgcaaggatcaatttatcttcaatctctttcatttcttggtcttcaagcgaaacgaaaacaggatcaccaatgacagggtaatcccctaaa 1717075  T
Q  320 accataacatcctccaaactcaccgtcgcctcaccaaacggaaacacaaatgtattagtctcacaacacca 390  Q
    ||||||| |||||||||| | |  || || |||||||| ||||||||||||||||| ||||||||||||||    
T  1717074 accataatatcctccaaagtgattgtggcttcaccaaaaggaaacacaaatgtatttgtctcacaacacca 1717004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 22689613 - 22689773
Alignment:
Q  20 gccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacc 119  Q
    ||||||||||||| ||| |||||||| |||||||||| ||||| ||||||||||||||| ||| ||||   |||   |||||||||||||||||| ||||    
T  22689613 gccaaagcaatagtattgcctctagccagatgaatagaaatagtaaacaaagaacttttgaccgacatatttttatgaggaaaaacaaaaattgacaacc 22689712  T
Q  120 aagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatcca 180  Q
    ||| | |||  |||||||| ||||||| |||| |||| ||||| |||||||||||||||||    
T  22689713 aagtagcaagaaatgcttcatgttcaaattcattaccattatcgatgaaaacatccatcca 22689773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 23 - 182
Target Start/End: Original strand, 11564095 - 11564254
Alignment:
Q  23 aaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaag 122  Q
    ||||||||||  ||||||||||||||||||| |||||||||||||||||||||||| | ||||| || |||   ||||||||||||||| || | ||| |    
T  11564095 aaagcaataggttttcctctagcaagatgaacagcaataggaaacaaagaacttttgatcaacaagcttttatgaggaaaaacaaaaatggaaagccatg 11564194  T
Q  123 caacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccata 182  Q
    ||  |||||||||||| ||||||| || |||| |||||  ||||||||  ||||||||||    
T  11564195 cagaaatgaatgcttcatgttcaattttactagctttactcatgaaaaattccatccata 11564254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 22685642 - 22685778
Alignment:
Q  21 ccaaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataacca 120  Q
    |||||||||||| ||| ||||||||||||||||||||||| ||||||| |||| |||||||||| ||   |||   |||||||||||||| ||| |||||    
T  22685642 ccaaagcaataggattccctctagcaagatgaatagcaatcggaaacatagaagttttcaccaaaat---tttatgaggaaaaacaaaaagtgacaacca 22685738  T
Q  121 agcaacaatgaatgcttcgtgttcaacttcactaccttta 160  Q
    |||| |||  |||||||| || |||| |||||||||||||    
T  22685739 agcagcaagaaatgcttcatgctcaatttcactaccttta 22685778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 185
Target Start/End: Original strand, 22652126 - 22652211
Alignment:
Q  100 aaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatg 185  Q
    ||||||||||||||| ||||||| | ||| ||| ||||| ||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  22652126 aaaaacaaaaattgacaaccaagtagcaaggaacgcttcatgttcaatttcactacctttatcgatgaaaatatccatccataatg 22652211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 22651854 - 22651912
Alignment:
Q  23 aaagcaatagaatttcctctagcaagatgaatagcaataggaaacaaagaacttttcac 81  Q
    |||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||    
T  22651854 aaagcaataggatttcctctagcaagatgaacagcaataggaaacaaacaacttttcac 22651912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 183
Target Start/End: Complemental strand, 6398404 - 6398258
Alignment:
Q  34 atttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaat 133  Q
    |||||||||||| |||| || |||||||| ||||||| ||||||||||||   |   ||| |||||||||||||||||| | ||||||  | ||| |||     
T  6398404 atttcctctagcgagattaacagcaatagaaaacaaacaacttttcaccattgt---tttactaggaaaaacaaaaattaacaaccaattagcaaggaag 6398308  T
Q  134 gcttcgtgttcaacttcactacctttatccatgaaaacatccatccataa 183  Q
    ||||| ||||||| ||||||||||||||  || || | ||||||||||||    
T  6398307 gcttcatgttcaatttcactacctttatagataaacatatccatccataa 6398258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 189
Target Start/End: Original strand, 6397773 - 6397865
Alignment:
Q  97 aggaaaaacaaaaattgataaccaagcaacaatgaatgcttcgtgttcaacttcactacctttatccatgaaaacatccatccataatgatat 189  Q
    ||||||| || ||||||| ||||| | | ||| ||| ||||| ||||||| ||||||||||||||| ||||| | ||||||||||||||||||    
T  6397773 aggaaaagcacaaattgacaaccaggtagcaaggaaggcttcatgttcaatttcactacctttatcgatgaacatatccatccataatgatat 6397865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 146
Target Start/End: Complemental strand, 12581535 - 12581426
Alignment:
Q  34 atttcctctagcaagatgaatagcaataggaaacaaagaacttttcaccaacatgcattttctaggaaaaacaaaaattgataaccaagcaacaatgaat 133  Q
    ||||| ||||||||||| ||||||||||| ||||||| ||||||||||   |||   | | | |||||||||||||||||| ||||||| | ||| |||     
T  12581535 atttcttctagcaagattaatagcaatagaaaacaaataacttttcac---catttttctacgaggaaaaacaaaaattgacaaccaagtagcaaggaag 12581439  T
Q  134 gcttcgtgttcaa 146  Q
    ||||| |||||||    
T  12581438 gcttcatgttcaa 12581426  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 12497352 - 12497303
Alignment:
Q  34 atttcctctagcaagatgaatagcaataggaaacaaagaacttttcacca 83  Q
    ||||| ||||||||||| ||||||||||| ||||||| ||||| ||||||    
T  12497352 atttcttctagcaagattaatagcaatagaaaacaaataacttatcacca 12497303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 12521217 - 12521168
Alignment:
Q  34 atttcctctagcaagatgaatagcaataggaaacaaagaacttttcacca 83  Q
    ||||| ||||||||||| ||||||||||| ||||||| ||||| ||||||    
T  12521217 atttcttctagcaagattaatagcaatagaaaacaaataacttatcacca 12521168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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