View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_5 (Length: 427)
Name: NF8488_low_5
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 411
Target Start/End: Original strand, 33636699 - 33637085
Alignment:
| Q |
15 |
gaaaccgaaatatgcagtatttttcatcatgaagcacacataataagtgacaaaaactctagc-agtacccctgaacatctcatgtccaagctaagctaa |
113 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33636699 |
gaaaccgaaacatgcaatatttttcatcatgaagcacacataataagtgacaaaaactctagccagtacccctgaacatctcatgtccaagctaagctaa |
33636798 |
T |
|
| Q |
114 |
aatagattnnnnnnncacatcaaccaactcaaagcatcacccttgcaaaagttccccatttgaaaagctgataggtaaaccaaccaatacacctctattt |
213 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
33636799 |
aatagataaaaaaaacacatcaaccaactcaaagcatcacccctgcaaaagttccccattagaaaagcttataggtaaaccaaccaatacacctctattt |
33636898 |
T |
|
| Q |
214 |
caacatttatcataaaattgatatggggattgcatagtgtaaggaagaaatgatacttatattattacaattaaatgtgcacttctttatatgcttggtt |
313 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
33636899 |
caacatttatcataaagttgatatggggattgcatagtgtaagcaagaaatgatactt-----------attaaatgtgcacttctttatatgcttggtt |
33636987 |
T |
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| Q |
314 |
gtacctgtcgttttttatccacggttctagattataaacttctgcgttaaagggaaaagcaggtaaagaagtcatcctttttgccatgatgaccaaaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33636988 |
gtacctgtcgttttttatccacggttctagattataaacatctgcattaaagggtaaagcaggtaaagaagtcatcctttttgccatgatgaccaaaa |
33637085 |
T |
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