View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_7 (Length: 401)
Name: NF8488_low_7
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 229
Target Start/End: Original strand, 36948223 - 36948433
Alignment:
| Q |
19 |
ggaatctctctcatctcactgtctttggctttcatggctggtctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatggcat |
118 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36948223 |
ggaatcgctctcatctcactgtctttggctttcattgctggcctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatgacat |
36948322 |
T |
|
| Q |
119 |
tgatttttgttgcggttgagattttgttatatgtgcttcttttccttccatcatcatcaactagcaaaccattgcggtacatttcctactacccctttct |
218 |
Q |
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|||||||||||| |||||||||| | |||||| |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36948323 |
tgatttttgttgtggttgagattcttttatatatgctccttttccttccatcatcatcaactagcataccattgcggtacatttcctactacccctttct |
36948422 |
T |
|
| Q |
219 |
tgttctagcat |
229 |
Q |
| |
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| ||||||||| |
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| T |
36948423 |
ttttctagcat |
36948433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 36956299 - 36956499
Alignment:
| Q |
19 |
ggaatctctctcatctcactgtctttggctttcatggctggtctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatggcat |
118 |
Q |
| |
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|||||| ||||||| ||| | ||||| |||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
36956299 |
ggaatcgctctcatttcattatcttttgctttcattgctggtctgtacactgttattagtgaacttaattggttggcaaatgtgtttctggttatggctc |
36956398 |
T |
|
| Q |
119 |
tgatttttgttgcggttgagattttgttatatgtgcttcttttccttccatcatcatcaactagcaaaccattgcggtacatttcctactacccctttct |
218 |
Q |
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|||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||| |
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| T |
36956399 |
tgatttttgttgcggttgtgatttttttatatatgcttcttttccttccatcatcatcaactagcaagccattgcggtacatttctcactacccttttct |
36956498 |
T |
|
| Q |
219 |
t |
219 |
Q |
| |
|
| |
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|
| T |
36956499 |
t |
36956499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 36935466 - 36935629
Alignment:
| Q |
40 |
tctttggctttcatggctggtctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatggcattgatttttgttgcggttgaga |
139 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||| |||||||||| || |||| || |
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| T |
36935466 |
tctttggctttcatggctggtctctacactgttatcagtgaactacgtcggttgtccaatgtgtttctggttatggcactgatttttgtcgccgttgtga |
36935565 |
T |
|
| Q |
140 |
ttttgttatatgtgcttcttttccttccatcatcatcaactagcaaaccattgcggtacatttc |
203 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| |
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| T |
36935566 |
ttttgttatatgtgcttcttttccttccatcaccatcaactagcaaccccttgcggtacatttc |
36935629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 37079496 - 37079286
Alignment:
| Q |
19 |
ggaatctctctcatctcactgtctttggctttcatggctggtctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatggcat |
118 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |
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| T |
37079496 |
ggaatcgctctcgtctcactatctttggcttttatggctggactctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttgtagctt |
37079397 |
T |
|
| Q |
119 |
tgatttttgttgcggttgagattttgttatatgtgcttcttttccttccatcatcatcaactagcaaaccattgcggtacatttcctactacccctttct |
218 |
Q |
| |
|
||||| |||| ||||| | |||||| || | | |||||| | |||||||| ||||| | ||||| ||||| ||||||||| ||||||||||| |
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| T |
37079396 |
caattttggttgtggttgtgtttttgtcgtacatcgtccttttcgtcccatcatcttcaaccaaaaaacccttgcgactcatttcctattacccctttct |
37079297 |
T |
|
| Q |
219 |
tgttctagcat |
229 |
Q |
| |
|
| | ||||||| |
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|
| T |
37079296 |
tttcctagcat |
37079286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 37069729 - 37069660
Alignment:
| Q |
26 |
ctctcatctcactgtctttggctttcatggctggtctctacactgttatcagtgaacttacttggttggc |
95 |
Q |
| |
|
||||||| || || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37069729 |
ctctcatttctctatctttggctttcatgactggtctctacactgttatcagtgaacttacttggttggc |
37069660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 36956625 - 36956670
Alignment:
| Q |
270 |
ttgtgtgtctattttgaccaatatgtatgtttatcttatcgtgtga |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36956625 |
ttgtgtgtctattttgaccaatatgtatgtttctcttatcgtgtga |
36956670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 37066145 - 37066085
Alignment:
| Q |
169 |
tcatcatcaactagcaaaccattgcggtacatttcctactacccctttcttgttctagcat |
229 |
Q |
| |
|
|||||||||||||| ||| | ||||| ||||||||||||| ||||||||| ||||||||| |
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|
| T |
37066145 |
tcatcatcaactagaaaatccttgcgatacatttcctactttccctttctttttctagcat |
37066085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 19 - 203
Target Start/End: Complemental strand, 12493525 - 12493341
Alignment:
| Q |
19 |
ggaatctctctcatctcactgtctttggctttcatggctggtctctacactgttatcagtgaacttacttggttggcaaatgtgtttctggttatggcat |
118 |
Q |
| |
|
|||||| ||||||| || | |||||||||||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||| |
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|
| T |
12493525 |
ggaatcgctctcatttcgttatctttggctttcatggctagtctttacactgttattagtgaacttacttggttgtcaaatgtgtctctggttatggcat |
12493426 |
T |
|
| Q |
119 |
tgatttttgttgcggttgagattttgttatatgtgcttcttttccttccatcatcatcaactagcaaaccattgcggtacatttc |
203 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
12493425 |
tgatttttattgcggttgtgattgcgttatatatgctcagtttccttccatcatcatcaactagcaagccattgcggtacatttc |
12493341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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