View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8488_low_8 (Length: 389)
Name: NF8488_low_8
Description: NF8488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8488_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 373
Target Start/End: Original strand, 28169013 - 28169374
Alignment:
| Q |
11 |
cagagagtgatgtccctattacctgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacactcgatctaaccaaattgatgattcaat |
110 |
Q |
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| T |
28169013 |
cagagagtgatgtccctattacatgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacacttgatctaaccaaattgatgattcaaa |
28169112 |
T |
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| Q |
111 |
tccataccaagtgaattgtctgtccagcaaacaaatttatgtaagtttcatcatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
210 |
Q |
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| T |
28169113 |
tccataccaagtgaattgtct-tccagcaaacaaatttatgtaagtttcaccatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
28169211 |
T |
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| Q |
211 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgt |
310 |
Q |
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| T |
28169212 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgt |
28169311 |
T |
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| Q |
311 |
atcaataattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaatag |
373 |
Q |
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| T |
28169312 |
ataaagaattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaatag |
28169374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 199 - 373
Target Start/End: Original strand, 8558671 - 8558832
Alignment:
| Q |
199 |
gtaatcccttctttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgct |
298 |
Q |
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| T |
8558671 |
gtaatcccttcattattattctttctttgttcgggttttaaaatttcattaaaatcatcgaacattatcaaaggagatgaaattgtcttcttaagctgcg |
8558770 |
T |
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| Q |
299 |
taatatttgtgtatcaataattcctttcctcgacaatcgatgatccataaatcaacaaaaaagatagaggaatag |
373 |
Q |
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| T |
8558771 |
taatatttgtg-------------tttcctcgacagtcattgatccataaatcaacaaaaaagatataggaatag |
8558832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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