View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8489_high_2 (Length: 276)
Name: NF8489_high_2
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 36939848 - 36940105
Alignment:
| Q |
1 |
atgaattctattctttctgtcttcccttcctaccacatgtgtgtgtctcttcttcccaagagaatatatatgtgatttatttgatagctatagattgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36939848 |
atgaattctattctttctgtcttcccttcttaccacatgtgtgtgtctcttcttcccaagagaatatatatgtgatttatttgatagctatagattgaat |
36939947 |
T |
|
| Q |
101 |
agaaacttcctcttcaaggcagactttgggagggcctgggaataaggagtttcctttctttaatgaggttcgattcgactgcctgcccatttgccaagct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36939948 |
agaaacttcctcttcaaggcagactttgggagggcctgggaataaggagtttcctttctttaatgaggttctattcgactgcctgcccatttgccaagct |
36940047 |
T |
|
| Q |
201 |
tggataagatgtccttaactaagagaaatgacttggggctgaagctctataggtatat |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36940048 |
tggataagatgtccttaactaagagaaatgacttggggctgaagctctataggtatat |
36940105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University