View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8489_low_1 (Length: 593)

Name: NF8489_low_1
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8489_low_1
NF8489_low_1
[»] chr5 (18 HSPs)
chr5 (17-551)||(11049718-11050256)
chr5 (50-545)||(10609565-10610060)
chr5 (48-559)||(10718743-10719254)
chr5 (50-536)||(10742570-10743056)
chr5 (24-409)||(10749010-10749392)
chr5 (48-414)||(10765105-10765471)
chr5 (48-472)||(10562880-10563304)
chr5 (50-181)||(9838551-9838682)
chr5 (71-191)||(7190878-7190998)
chr5 (80-162)||(19608107-19608189)
chr5 (84-181)||(10602642-10602739)
chr5 (493-559)||(10764942-10765008)
chr5 (296-389)||(10548894-10548987)
chr5 (98-191)||(10662298-10662391)
chr5 (80-180)||(10578892-10578992)
chr5 (84-180)||(10590651-10590747)
chr5 (80-128)||(10598974-10599022)
chr5 (447-550)||(10549045-10549148)
[»] chr6 (8 HSPs)
chr6 (48-544)||(12905039-12905535)
chr6 (48-480)||(12946494-12946926)
chr6 (227-480)||(12930308-12930561)
chr6 (227-480)||(12956110-12956363)
chr6 (227-544)||(12897597-12897914)
chr6 (48-187)||(12897418-12897557)
chr6 (48-187)||(12955931-12956070)
chr6 (48-187)||(12930129-12930268)
[»] chr2 (1 HSPs)
chr2 (48-535)||(17925275-17925762)
[»] chr3 (1 HSPs)
chr3 (78-213)||(31469350-31469479)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 551
Target Start/End: Complemental strand, 11050256 - 11049718
Alignment:
17 atataccgtgacccaaatagagctcttgaataatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagag 116  Q
    |||||||||||||||||| ||||||||||||   ||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
11050256 atataccgtgacccaaatggagctcttgaat---cttggaattcttccatccatttctgcaagtggcatggaatcacatgcagcctcatgcatcaaagag 11050160  T
117 ttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatag 216  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
11050159 ttacaaagttgaacctagaaggatatcagttgcatggatcaatatcaccctatgttggcaatctcacttttttgacagaattcaatctcatgaacaacag 11050060  T
217 atttcatggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctc 316  Q
     ||  |||| ||||||||||| |||||||||  |||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
11050059 cttctatggagaaattccacaagagttgggtcggttgctacaattggaacaacttttactcagcaataactctcttgcaggagaaattcctacaaacctc 11049960  T
317 acatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgc 416  Q
    ||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||| || ||||||| |||||||| ||| |||||||||||||||||||||     
11049959 acacattgctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaatgaaattggctctttgaaaaaacttcaatcattgg 11049860  T
417 ccatttggaaaaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaactt-------ag 509  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||       ||    
11049859 ccatttggaaaaataaattaactggaggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgtgtataacaacttagaacttag 11049760  T
510 aaagagatattccacaagaaatatgtcacctcaaaagcttgt 551  Q
    || |||||||||||||||||||||||||||||||||||||||    
11049759 aaggagatattccacaagaaatatgtcacctcaaaagcttgt 11049718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 50 - 545
Target Start/End: Original strand, 10609565 - 10610060
Alignment:
50 tcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctc-atgcatcaaagagttacaaagttgaacctagaaggataacaattg 148  Q
    |||||||| | |||||||||||| ||  |||||| |||| |||||||||| ||| ||||| |||||||||| | |||||||||| |||||||| || |||    
10609565 tcttggaatttttccatccatttatgtaagtggcgtggagtcacatgcag-ctctatgcaacaaagagttatagagttgaaccttgaaggatatcagttg 10609663  T
149 catggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggta 248  Q
    |||||||| |||||||| ||||| |||||||| |||||| | ||    || |||||||||||||| || ||  ||||   ||| || ||||||||||||     
10609664 catggatccatatcaccatatgtaggcaatcttacttttcttacaaccttgaatctcatgaacaacagcttctatggaacaatcccgcaggagttgggtc 10609763  T
249 agttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtattt 348  Q
    ||||| ||||||||||||||||||  || | |||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||   |||    
10609764 agttgctacaattgcaacaactttatctcatcaataactcttttgcaggagaaattcctacaaacctgacacattgctccaatctcaaagagttacgttt 10609863  T
349 gggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatc 448  Q
    |||||| |||||||| | ||| |||||||| |||||||||| ||| |||||||| |||||||   || ||||||||||||| |||||||||||||||||     
10609864 gggaggaaacaatttgattggcaaaataccgattgaaattggctctttgaaaaagcttcaatatgtgaccatttggaaaaacaaattaaccggaggaatt 10609963  T
449 ccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaa 545  Q
    ||||||||| |||||||||||||| |||||||   ||||||| || |||  |||||||||||| | |||||||||||||||| |||||  |||||||    
10609964 ccttcattcgtagggaatctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattccacaagaaacatgtcgtctcaaaa 10610060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 48 - 559
Target Start/End: Complemental strand, 10719254 - 10718743
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||| |||||| |  ||    
10719254 aatcttggaattcttccatccacttctgcaagtggcatggaatcacatgcagccccatgcatgaaagagttacagagttgaacctaggaggatatctgtt 10719155  T
148 gcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggt 247  Q
     ||||||||  |||| ||| |||||||||||||| | |||||||   |  ||||||| || ||||| || ||   ||| ||||||||||| ||||||||     
10719154 acatggatctttatctccccatgttggcaatctctcctttttgataaacctcaatcttataaacaacagcttctttggagaaattccacatgagttgggc 10719055  T
248 aagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatt 347  Q
    |||||| ||||||||||||||||||  |||| |||||||||| ||| |||  |||||||||||||||| || |||||||||||||||||||| || |  |    
10719054 aagttgctacaattgcaacaactttatcttaacaataactcttttgcaggtaaaattcctacaaacctgacgtattgctccaatctcaaagagttatcct 10718955  T
348 tgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaat 447  Q
    ||  |||||| ||  | | ||| ||| ||||| | ||| ||| ||| |||||||  ||||||    || ||||| | ||||| || ||||| ||||||||    
10718954 tgcaagggaataagctcattggcaaattaccagtagaagttggctctttgaaaaggcttcaaattctggccattggaaaaaacaatttaactggaggaat 10718855  T
448 cccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaagc 547  Q
    |||||||||||| || ||||||||| | |||   |   ||||  || ||||||||||||||||  ||| |||||||| |||||||||||  ||||||| |    
10718854 cccttcattcatgggaaatctttcatgtttatggggactttcggttccttataacaacttagacggagttattccaccagaaatatgtcgtctcaaaaac 10718755  T
548 ttgtcaatttta 559  Q
    ||| ||||||||    
10718754 ttgacaatttta 10718743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 50 - 536
Target Start/End: Complemental strand, 10743056 - 10742570
Alignment:
50 tcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgc 149  Q
    |||||||| ||||||||||| |||||| ||||| |||||||||||||||  | ||||||||||||||||| | ||||| |||||| | | || |  || |    
10743056 tcttggaattcttccatccacttctgcaagtggtatggaatcacatgcaaccccatgcatcaaagagttatagagttggacctaggaagttatcgcttac 10742957  T
150 atggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggtaa 249  Q
    | |||    |||| ||| |||||||||||||||||||| |||   || |||| ||    ||||| | |||  |||| ||||||||||| ||||||||| |    
10742956 aaggacgtttatccccccatgttggcaatctcacttttctgataaaactcaaacttgaaaacaacacattctatggagaaattccacaagagttgggtca 10742857  T
250 gttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttg 349  Q
    |||| ||||||||||||||||||| ||||  ||||||||| ||| ||| ||||||||||||||| | ||||||||||| ||||| ||||   |   ||||    
10742856 gttgctacaattgcaacaactttttcttactaataactcttttgcaggtgaaattcctacaaacttgacatattgctcaaatctgaaagtcataactttg 10742757  T
350 ggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaatcc 449  Q
    | ||||||||| || | ||| ||||||||||||||||||| ||  |||||||||||||||||||||    ||||||| || || ||||| |||||||||     
10742756 gcagggaacaagttgattggcaaaataccaattgaaattggctatttgaaaaaacttcaatcattgagtgtttggaataacaatttaactggaggaatct 10742657  T
450 cttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtc 536  Q
    |||||| |||||||||||||||||| ||||    ||||||  || |||  |||||||||||| | ||||||||||||||||||||||    
10742656 cttcatccatagggaatctttcaagtttaatgcttttttcggttccttcaaacaacttagaaggggatattccacaagaaatatgtc 10742570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 24 - 409
Target Start/End: Complemental strand, 10749392 - 10749010
Alignment:
24 gtgacccaaatagagctcttgaataatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaa 123  Q
    |||||||||||| |||||||||||   ||||||| ||||||||||| |||||| |||||||||||||||||||||  | ||||||| |||||||||||||    
10749392 gtgacccaaataaagctcttgaat---cttggaattcttccatccacttctgcaagtggcatggaatcacatgcaaacccatgcatgaaagagttacaaa 10749296  T
124 gttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcat 223  Q
    ||||||| |||||||||| || || ||||||||  |||||||| |||||||||||||||||||| | ||  |  | ||  |    ||||||   || | |    
10749295 gttgaacttagaaggatatcatttacatggatctttatcaccccatgttggcaatctcacttttctcacaaatctaaacattggaaacaatgacttcctt 10749196  T
224 ggtgaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatatt 323  Q
    || ||||| ||| | |||||||||  |||| |||||||||||||||||   || | |||||||||  | | ||||||||||||| ||||| | |||||||    
10749195 ggagaaatcccagaagagttgggtcggttgctacaattgcaacaacttgatctcatcaataactcgttcgcaggagaaattccttcaaacttgacatatt 10749096  T
324 gctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaa 409  Q
    |||||||||||||||  ||  || |||||||||||||| | | ||| ||||||||||||||||||| ||| |||||||| ||||||    
10749095 gctccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaattgaaattggctctttgaaaaagcttcaa 10749010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 48 - 414
Target Start/End: Complemental strand, 10765471 - 10765105
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| ||||||||||| || ||  |||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||| || ||    
10765471 aatcttggaattcttccatccacttttgaaagtggcatggaatcacatgcagcctcatgcatcaaagggttacagagttgaacctagcaggatatcagtt 10765372  T
148 gcatggatcaatatcaccctatgttggcaatctcacttttttgactgaat-tcaatctcatgaacaatagatttcatggtgaaattccacaggagttggg 246  Q
     ||||||||  |||| |||||| |||| |||||||||||| ||| | ||| |||| ||    |||||||| |||  ||| ||||||||||||||||| ||    
10765371 acatggatctttatctccctatcttggtaatctcacttttctga-taaatctcaaccttcaaaacaatagtttttctggagaaattccacaggagttcgg 10765273  T
247 taagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtat 346  Q
    | ||||| ||||| ||||||||||||  ||    ||||||||  ||  |||||||||||||| |||| | || |||||||||||||||| ||| |||  |    
10765272 tcagttgctacaactgcaacaactttatctccttaataactcgtttacaggagaaattcctataaacttgacgtattgctccaatctcatagacttgatt 10765173  T
347 ttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcatt 414  Q
    |||||||||||||| || |  || ||||||| ||||||||||| ||| |||||||| ||||| |||||    
10765172 ttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaaaccttcattcatt 10765105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 48 - 472
Target Start/End: Original strand, 10562880 - 10563304
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaaccta-gaaggataacaat 146  Q
    |||||||||| ||||||||||| |||||| ||||||| |||||||| ||||  | ||||||||||||||||| | ||||||||||| |||| | | || |    
10562880 aatcttggaattcttccatccacttctgcaagtggcagggaatcacttgcaaccccatgcatcaaagagttatagagttgaacctaagaagta-atcact 10562978  T
147 tgcatggatcaatatcaccctatgttggcaatctcacttttttgactgaat-tcaatctcatgaacaatagatttcatggtgaaattccacaggagttgg 245  Q
    | ||||||||  |||| |||||||||||||||||||| ||||||| | ||| || | ||    |||||||| |||  ||| ||||| |||| ||||||||    
10562979 tacatggatctttatctccctatgttggcaatctcacctttttga-taaatctcgaccttggaaacaatagtttttctggagaaatcccaccggagttgg 10563077  T
246 gtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgta 345  Q
    || ||||| ||||| ||||||| ||||  ||    ||||||||  ||||||||||||||||||||||| | ||||||||||||||||||| ||| |||      
10563078 gtcagttgctacaactgcaacacctttatctccttaataactcgtttgtaggagaaattcctacaaacttgacatattgctccaatctcatagacttgat 10563177  T
346 tttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggagga 445  Q
    ||||||||||||||| || | ||| ||||||||||||||||||| ||| |||||||| ||||| ||||| | | |||     || || ||||| |||||     
10563178 tttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaaagcttcattcattccacctttttggtaacaatttaactggaggg 10563277  T
446 atcccttcattcatagggaatctttca 472  Q
    |||||||||| ||||||||| ||||||    
10563278 atcccttcatccatagggaacctttca 10563304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 181
Target Start/End: Complemental strand, 9838682 - 9838551
Alignment:
50 tcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgc 149  Q
    |||||||| ||||| ||||| |||||| | |||||||||||||||||||  | ||||||||||||||||||||| |||||| || |||||||  | ||||    
9838682 tcttggaattcttctatccacttctgcaactggcatggaatcacatgcaaccccatgcatcaaagagttacaaaattgaacttacaaggatacaagttgc 9838583  T
150 atggatcaatatcaccctatgttggcaatctc 181  Q
    ||||||| || ||||| ||  |||||||||||    
9838582 atggatccatgtcaccttacattggcaatctc 9838551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 7190878 - 7190998
Alignment:
71 ttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatg 170  Q
    |||||| ||||| |||||||||||||||||| |||||||||||||||| |  |||| ||| | |||||||| ||  |||||||||  ||||| ||| |||    
7190878 ttctgcaagtggtatggaatcacatgcagtcccatgcatcaaagagttgccgagttaaacttggaaggatatcagctgcatggattgatatctccccatg 7190977  T
171 ttggcaatctcacttttttga 191  Q
    ||||||||||| |||||||||    
7190978 ttggcaatctctcttttttga 7190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 19608189 - 19608107
Alignment:
80 tggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatc 162  Q
    |||||||||||||||||||| | ||||||||||||||||| | | ||||||||| |||||||  |||||||||||||||||||    
19608189 tggcatggaatcacatgcagccccatgcatcaaagagttatagaattgaacctacaaggatatgaattgcatggatcaatatc 19608107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 84 - 181
Target Start/End: Original strand, 10602642 - 10602739
Alignment:
84 atggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctc 181  Q
    ||||||||| |||| ||| || |||||||||||||||||| |||||  |  |||| ||  ||||||||||||||||||| || ||| |||||||||||    
10602642 atggaatcatatgcggtcccaagcatcaaagagttacaaacttgaagttgcaagggtacaaattgcatggatcaatatctccgtatattggcaatctc 10602739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 493 - 559
Target Start/End: Complemental strand, 10765008 - 10764942
Alignment:
493 tgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaagcttgtcaatttta 559  Q
    ||||| |||||| |||| | |||||||||||||||||||||||| |||||||| |||| || |||||    
10765008 tgcttctaacaaattaggaggagatattccacaagaaatatgtcgcctcaaaaacttgacattttta 10764942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 10548894 - 10548987
Alignment:
296 ggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattg 389  Q
    |||||||||||||||||| | ||| |||| | ||| || ||| | || |  ||| ||||||||||||| | |||||||||||||||||||||||    
10548894 ggagaaattcctacaaacttgacaaattgtttcaaccttaaatacttatccttgagagggaacaatttgattggaaaaataccaattgaaattg 10548987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 10662391 - 10662298
Alignment:
98 agtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatctcacttttttga 191  Q
    ||||||||||| |||||||||| | ||||  || |||| |||||  | ||||||||||  ||||| ||| |||||||||||||| |||||||||    
10662391 agtctcatgcaacaaagagttatagagttagacttagatggatataacttgcatggattcatatctccccatgttggcaatctctcttttttga 10662298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 180
Target Start/End: Original strand, 10578892 - 10578992
Alignment:
80 tggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatc 179  Q
    |||| |||||||  |||||||| || |||||||||| |||| ||||| || ||   ||||||| | ||||||||||| ||||| || |||||||||||||    
10578892 tggcctggaatcgtatgcagtcccaagcatcaaagatttaccaagttaaagctgccaggataaaagttgcatggatccatatctccatatgttggcaatc 10578991  T
180 t 180  Q
    |    
10578992 t 10578992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 180
Target Start/End: Complemental strand, 10590747 - 10590651
Alignment:
84 atggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaatct 180  Q
    ||||||||| |||||||| || ||||||||||||||| |||||||| ||   ||||||  | ||||||||||| ||||| || ||| |||| |||||    
10590747 atggaatcatatgcagtcccaagcatcaaagagttaccaagttgaagctgtcaggatacaagttgcatggatccatatctccatatattggtaatct 10590651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 10598974 - 10599022
Alignment:
80 tggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttga 128  Q
    ||||||||||||| ||||| || || |||||||||||||||||||||||    
10598974 tggcatggaatcatatgcaatcccaagcatcaaagagttacaaagttga 10599022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 447 - 550
Target Start/End: Original strand, 10549045 - 10549148
Alignment:
447 tcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaaag 546  Q
    ||||| ||||| ||||||||||||||   || |  | ||||||| || |||||||||| || ||  ||||||||||||||||||||||||  |||||||     
10549045 tccctccattcttagggaatctttcatatttgataggtttttcagtttcttataacaatttggagggagatattccacaagaaatatgtcgtctcaaaaa 10549144  T
547 cttg 550  Q
    ||||    
10549145 cttg 10549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 113; Significance: 6e-57; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 48 - 544
Target Start/End: Original strand, 12905039 - 12905535
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| || |||||||| |||||| ||||||| |||| || ||    
12905039 aatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctagaaagatatcagtt 12905138  T
148 gcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggt 247  Q
     ||||||||  |||| ||| |||||  ||||||||||||| |||      || |  | |   |||| |  ||   ||| |||||||| ||||| ||||||    
12905139 acatggatctttatctccccatgtttccaatctcacttttctgaaaagtgtcgacattacagacaacaacttctttggagaaattcctcaggatttgggt 12905238  T
248 aagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatt 347  Q
     ||||| |||| |||||||||||| | || |||||||| ||| ||||||| || |||||||||||||| ||||||||||||||||||||    |||||||    
12905239 cagttgctacatttgcaacaacttattctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgctccaatctcaagttattgtatt 12905338  T
348 tgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaat 447  Q
    ||   |||||| || | | ||| |||||||||| |||||| | ||| |||||||| |||||| || ||    |||||| ||| || |||||||| |||||    
12905339 tgaatgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaagcttcaaacaatgagtgtttggagaaacaagttaaccggtggaat 12905438  T
448 cccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgtcacctcaaa 544  Q
    ||||||||||||||| ||| |||||||||||||   | | ||| || ||  |||||| || ||  |||||||||||||||||||||||  |||||||    
12905439 cccttcattcataggaaatatttcaagcttaacacgtctatcagtttctggtaacaattttgagggagatattccacaagaaatatgtttcctcaaa 12905535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 48 - 480
Target Start/End: Original strand, 12946494 - 12946926
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| || ||||| || |||||| |||||||||||||||||||||| | ||||||| || |||||||| ||||||  |||||| |||| || ||    
12946494 aatcttggaattcatccattcacttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacacagttgactctagaaagatatcagtt 12946593  T
148 gcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggt 247  Q
     ||||||||  |||| ||| |||||  ||||||||||||| |||    | ||||  |     |||| |  ||   ||| |||||||||||||||||||||    
12946594 acatggatctttatctccccatgtttccaatctcacttttctgaaaacactcaacattggagacaacaacttctttggagaaattccacaggagttgggt 12946693  T
248 aagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatt 347  Q
     ||||| |||| |||||||||||||| || | |||||||||| ||| ||| || |||||||||||||| |||||||| ||||| ||||||  ||||| ||    
12946694 cagttgctacatttgcaacaactttttctcaacaataactcttttgcaggtgagattcctacaaacctgacatattgttccaaactcaaatttttgtttt 12946793  T
348 tgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaat 447  Q
    || | |||||| || | |  || |||||||||| |||||| | ||| ||||| ||  ||||| || || |  ||  |||||| || |||| |||||||||    
12946794 tgagtgggaaccatctcatcggtaaaataccaactgaaatcggctctttgaagaaggttcaagcaatgactgttgcgaaaaacaatttaatcggaggaat 12946893  T
448 cccttcattcatagggaatctttcaagcttaac 480  Q
    |||||||||||| || |||||||||||||||||    
12946894 cccttcattcattggaaatctttcaagcttaac 12946926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 227 - 480
Target Start/End: Original strand, 12930308 - 12930561
Alignment:
227 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 326  Q
    ||||||||||||||||||||| ||||| |||| |||||||| ||| | || | |||||| ||| ||||||| || |||||||||||||| ||||||||||    
12930308 gaaattccacaggagttgggtcagttgctacatttgcaacatcttattctcaccaataattcttttgtaggtgagattcctacaaacctgacatattgct 12930407  T
327 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaa 426  Q
    |||||||||||   |||||||||   |||||| || | ||||| ||||||||||||||||||| ||| |||||||| |||||| || |  |  || ||||    
12930408 ccaatctcaaattattgtatttgaatgggaaccatctcaatggtaaaataccaattgaaattggctctttgaaaaagcttcaagcaatatctgttgggaa 12930507  T
427 aaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 480  Q
     ||  | ||||||| ||||||||||||||| ||||| ||||||||| |||||||    
12930508 taaccatttaaccgaaggaatcccttcatttataggaaatctttcatgcttaac 12930561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 227 - 480
Target Start/End: Original strand, 12956110 - 12956363
Alignment:
227 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 326  Q
    ||||||||||||||||||||| ||||| |||| ||||||| |||||  || |||||||||||| ||||||| || ||||| |||||| | ||||||||||    
12956110 gaaattccacaggagttgggtcagttgctacatttgcaacgactttctctcagcaataactcttttgtaggtgagattccaacaaacttgacatattgct 12956209  T
327 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaa 426  Q
    |||||||||||   |||| ||||   |||||| || | ||||| |||||||||| |||||| | ||| |||||||| ||||||  | || |  ||||||     
12956210 ccaatctcaaattattgtttttgaatgggaaccatctcaatggtaaaataccaactgaaatcggctctttgaaaaagcttcaaagaatgactgtttggag 12956309  T
427 aaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaac 480  Q
    ||| || ||||| || |||||||||||||||||||| |||||||||||||||||    
12956310 aaacaagttaactggtggaatcccttcattcataggaaatctttcaagcttaac 12956363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 227 - 544
Target Start/End: Original strand, 12897597 - 12897914
Alignment:
227 gaaattccacaggagttgggtaagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgct 326  Q
    |||||||| ||||| |||||| ||||| |||| |||||||| ||| | || | |||||| ||| ||||||| || |||||||||||||| ||||||||||    
12897597 gaaattcctcaggatttgggtcagttgctacatttgcaacaccttattctcaccaataattcttttgtaggtgagattcctacaaacctgacatattgct 12897696  T
327 ccaatctcaaagatttgtatttgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaa 426  Q
    ||||||||||    |||||||||   |||||| || | | ||| |||||||||| |||| | | ||| |||||||| ||||||||| ||    || ||||    
12897697 ccaatctcaagttattgtatttgaatgggaaccatctcattggtaaaataccaactgaattcggctctttgaaaaagcttcaatcaatgtttgttcggaa 12897796  T
427 aaataaattaaccggaggaatcccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaa 526  Q
     || || |||||||||||||||||||||||||| || |||||||||||||||||   | | ||| || || | ||||| || ||  ||||||||||||||    
12897797 taacaatttaaccggaggaatcccttcattcattggaaatctttcaagcttaacacgtctgtcagtttctgaaaacaattttgagggagatattccacaa 12897896  T
527 gaaatatgtcacctcaaa 544  Q
    |||||||||  |||||||    
12897897 gaaatatgtttcctcaaa 12897914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 12897418 - 12897557
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| || |||||||| |||||| |||| || |||| || ||    
12897418 aatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagtt 12897517  T
148 gcatggatcaatatcaccctatgttggcaatctcactttt 187  Q
     ||||||||  |||| ||| ||||| ||||||||||||||    
12897518 acatggatctttatctccccatgtttgcaatctcactttt 12897557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 12955931 - 12956070
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| |||||||||||||||||| ||||||| |||||||||||||| | ||||||| || |||||||| |||||| |||| || |||| || ||    
12955931 aatcttggaattcttccatccatttctgcaagtggcaaggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagtt 12956030  T
148 gcatggatcaatatcaccctatgttggcaatctcactttt 187  Q
     ||||||||  |||| ||| ||||| ||||||||||||||    
12956031 acatggatctttatctccccatgtttgcaatctcactttt 12956070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 12930129 - 12930268
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| ||||||||||| |||||| ||||||||||||||||||| || | ||||||| || |||||||| |||||| |||| || |||| || ||    
12930129 aatcttggaattcttccatccacttctgcaagtggcatggaatcacatgtagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagtt 12930228  T
148 gcatggatcaatatcaccctatgttggcaatctcactttt 187  Q
     ||||||||  |||| ||| ||||| ||||||||||||||    
12930229 acatggatctttatctccccatgtttgcaatctcactttt 12930268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 48 - 535
Target Start/End: Complemental strand, 17925762 - 17925275
Alignment:
48 aatcttggaactcttccatccatttctgcgagtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaatt 147  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| || |||||||| |||||| |||| || |||| || ||    
17925762 aatcttggaattcttccatccatttctgcaagtggcatggaatcacatgcagccccatgcatgaacgagttacagagttgagcctaaaaagatatcagtt 17925663  T
148 gcatggatcaatatcaccctatgttggcaatctcacttttttgactgaattcaatctcatgaacaatagatttcatggtgaaattccacaggagttgggt 247  Q
     ||||||||  |||| ||| ||||| |||||||||||||| |||      || |  |     |||| |  ||   ||| |||||||||||||||||||||    
17925662 acatggatctttatctccccatgtttgcaatctcacttttctgaaaactctcgacattggagacaacaacttctttggagaaattccacaggagttgggt 17925563  T
248 aagttgatacaattgcaacaacttttacttagcaataactctcttgtaggagaaattcctacaaacctcacatattgctccaatctcaaagatttgtatt 347  Q
     ||||| |||| ||||| |||||||| || |||||||| ||| ||||||| || |||||||||||||| |||||||| || |||||||||   |||| ||    
17925562 cagttgctacatttgcagcaactttttctcagcaataattcttttgtaggtgagattcctacaaacctgacatattgttctaatctcaaattattgtttt 17925463  T
348 tgggagggaacaatttaaatggaaaaataccaattgaaattgcctcgttgaaaaaacttcaatcattgcccatttggaaaaataaattaaccggaggaat 447  Q
    || | |||||| || | | ||| |||||||||| |||||| | ||| ||||||||||||||| |  || |  ||  | | || || ||||| ||||||||    
17925462 tgagtgggaaccatctcattggtaaaataccaactgaaatcggctctttgaaaaaacttcaagccatgactgttgcgcataacaatttaactggaggaat 17925363  T
448 cccttcattcatagggaatctttcaagcttaaccgatttttcatttgcttataacaacttagaaagagatattccacaagaaatatgt 535  Q
    ||||||||||||||| ||||||||| |||||||   | | |||  ||||  |||||| || ||  |||||||||||||||||||||||    
17925362 cccttcattcataggaaatctttcatgcttaacacgtctatcagctgctcttaacaattttgagggagatattccacaagaaatatgt 17925275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 31469479 - 31469350
Alignment:
78 agtggcatggaatcacatgcagtctcatgcatcaaagagttacaaagttgaacctagaaggataacaattgcatggatcaatatcaccctatgttggcaa 177  Q
    |||||||||||||||||||||      || |||||||||||||| | ||||| |||||||||||  | ||||||||||| |||||||| |||||||| ||    
31469479 agtggcatggaatcacatgca------tgaatcaaagagttacagaattgaaactagaaggatataagttgcatggatctatatcaccttatgttggtaa 31469386  T
178 tctcacttttttgactgaattcaatctcatgaacaa 213  Q
    |||| ||||||||||  | || ||||||||||||||    
31469385 tctctcttttttgacaaacttgaatctcatgaacaa 31469350  T

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