View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8489_low_12 (Length: 206)
Name: NF8489_low_12
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 8425118 - 8425292
Alignment:
| Q |
10 |
gaagcagagaatatgtacatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatga |
109 |
Q |
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| T |
8425118 |
gaagcaaagaatatgtacatcatctccgtgaagggaatcaaaggtaggttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgt |
8425217 |
T |
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| Q |
110 |
agaagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcccaa |
184 |
Q |
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| T |
8425218 |
agaagggaaaacctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagtgcaagccttggcgcccaa |
8425292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 12 - 181
Target Start/End: Original strand, 30234207 - 30234376
Alignment:
| Q |
12 |
agcagagaatatgtacatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaag |
111 |
Q |
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| T |
30234207 |
agcaaagaatctgtacatcatctccgtgaagggaatcaagggtaggttgaatcgtcttccttcagcttgtgctggtgacatggtgatggctactgtgaag |
30234306 |
T |
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| Q |
112 |
aagggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcc |
181 |
Q |
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| T |
30234307 |
aagggaaagcctgatctcaggaagaaggttttgccagctgtcatcgttcgtcagcgtaagccatggcgcc |
30234376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 181
Target Start/End: Original strand, 1530468 - 1530636
Alignment:
| Q |
17 |
agaatatgtacatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaaga |
112 |
Q |
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| T |
1530468 |
agaatctgcacatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaaga |
1530567 |
T |
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| Q |
113 |
agggaaaacctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcc |
181 |
Q |
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| T |
1530568 |
aggggaaacctgatctcaggaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgcc |
1530636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 26 - 181
Target Start/End: Complemental strand, 22476237 - 22476078
Alignment:
| Q |
26 |
acatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaagaagggaaaac |
121 |
Q |
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| T |
22476237 |
acatcatctctgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaagaagggaaaac |
22476138 |
T |
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| Q |
122 |
ctgatctcaggaagaaggttttgccagctgccatcgttcgccagtgcaagccttggcgcc |
181 |
Q |
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| T |
22476137 |
ctgatctcatgaagaaggttttgccagttgtcatcgttcgtcagcgtaagccttggcgcc |
22476078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 26842246 - 26842378
Alignment:
| Q |
17 |
agaatatgtacatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatgg----tgatggctactatgaaga |
112 |
Q |
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| T |
26842246 |
agaatctgcacatcatctccgtgaagggaatcaagggtagattgaatcgtcttccttcagcttgtgttggtgacatggtgattgatggctactgtgaaga |
26842345 |
T |
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| Q |
113 |
agggaaaacctgatctcaggaagaaggttttgc |
145 |
Q |
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| T |
26842346 |
agggaatacctgatctcaggaagaaggttttgc |
26842378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 39327997 - 39327882
Alignment:
| Q |
25 |
tacatcatctccgtgaagggaatcaaaggtagcttgaatcgtcttccttcagcttgtgttggtgacatggtgatggctactatgaagaagggaaaacctg |
124 |
Q |
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| T |
39327997 |
tacatcatttccgtcaaaggtattaagggaaggttgaaccgtttgccttcagcttgcgctggtgacatggtgatggccaccgtgaagaagggaaagcctg |
39327898 |
T |
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| Q |
125 |
atctcaggaagaaggt |
140 |
Q |
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| T |
39327897 |
atctccgtaagaaggt |
39327882 |
T |
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