View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8489_low_2 (Length: 566)
Name: NF8489_low_2
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Complemental strand, 32707869 - 32707401
Alignment:
| Q |
19 |
ctatgtacctagagtactaatcatgcaatgtttaaaattttattttgctaaaattagaaagtgatcgcgactggaataataacttaattgatatcaattt |
118 |
Q |
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| T |
32707869 |
ctatgtacctagagtactaatcatgcaatgtttaaaattttattttgctaaaattagaaagtgatcgtgactggaataatatcttaattgatatcaattt |
32707770 |
T |
|
| Q |
119 |
ggttaaaacaacgaaaaataaatatggagtttatattgaaccaacatcattcaagtgcttattgtcttaattattaaaacaatagagttatgagtttagg |
218 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32707769 |
ggttaaaacaacgaaaaataaatatgtagtttatattgaaccaacatcattcaagtgattattgtcttaattattgaaacaatagagttatgagtttagg |
32707670 |
T |
|
| Q |
219 |
--------------tgcacccctccatatgtggctcttttgtttattttactattagttttagttagctttggtttctcatatttaatttcctttgcagg |
304 |
Q |
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| T |
32707669 |
atttaaggtttaggtgcacccctccatatgtggctcttttgtttattttactattagttttagttagctttggtttctcatatttaatttcctttgcagg |
32707570 |
T |
|
| Q |
305 |
gtggccaaccagtcttgtatgtccaataacttcatgtgtagggcaaccgaccacctagtctttcaaattctaaaaaagaaaatgctttatatgtacatac |
404 |
Q |
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| T |
32707569 |
gtggccaaacagtcttgtatgtccaataacttcatgtgtagggcaaccgaccacc-agtcttccaaattctaaaaaagaaaatgctctatatgtacatcc |
32707471 |
T |
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| Q |
405 |
aaattcattctacatgtaaagaaaggaatataacaagagatagagataaaatgaagtgttgaatgagtgt |
474 |
Q |
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| T |
32707470 |
aaattcattctacatgtaaagaaaggaatataataagagatagagataaaatgaaatgttgaatgagtgt |
32707401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 448 - 560
Target Start/End: Complemental strand, 9233276 - 9233158
Alignment:
| Q |
448 |
agataaaatgaagtgttgaatgagtgtatataaagttagggtgttaaaatatcatagttagaaaaattaggataagtaat------taaaaagcttaacc |
541 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
9233276 |
agataaaatgaagtgttgaatgagtgtatgtaaagttagggtgttaaaatatcatagttagaaaaattaggataagtaattaattataaaaagcttagcc |
9233177 |
T |
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| Q |
542 |
actgcacaagacatgacct |
560 |
Q |
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| T |
9233176 |
actgcacaagacatgacct |
9233158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 167
Target Start/End: Original strand, 29726183 - 29726250
Alignment:
| Q |
100 |
acttaattgatatcaatttggttaaaacaacgaaaaataaatatggagtttatattgaaccaacatca |
167 |
Q |
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| T |
29726183 |
acttaattgatagcagtttgattaaaacaacagaaaataaatatgtagtttgtattgaaccgacatca |
29726250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 33060597 - 33060649
Alignment:
| Q |
92 |
gaataataacttaattgatatcaatttggttaaaacaacgaaaaataaatatg |
144 |
Q |
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| T |
33060597 |
gaataataacttaattgatatcaatttgatcaaaacgacaaaagataaatatg |
33060649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 7779921 - 7779848
Alignment:
| Q |
93 |
aataataacttaattgatatcaatttggttaaaacaacgaaaaataaatatggagtttatattgaaccaacatc |
166 |
Q |
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| T |
7779921 |
aataatgacttaactgatatcaatttgattaaaactatggaaaataaatatgtagctcgtattaaaccaacatc |
7779848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 103 - 143
Target Start/End: Complemental strand, 14063638 - 14063598
Alignment:
| Q |
103 |
taattgatatcaatttggttaaaacaacgaaaaataaatat |
143 |
Q |
| |
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|||||||||| | |||| ||||||||||||||||||||||| |
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| T |
14063638 |
taattgatataagtttgattaaaacaacgaaaaataaatat |
14063598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 440 - 476
Target Start/End: Original strand, 11697661 - 11697697
Alignment:
| Q |
440 |
agagatagagataaaatgaagtgttgaatgagtgtat |
476 |
Q |
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|||| |||||| ||||||||||||||||||||||||| |
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| T |
11697661 |
agagttagagagaaaatgaagtgttgaatgagtgtat |
11697697 |
T |
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