View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8489_low_3 (Length: 474)
Name: NF8489_low_3
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5232281 - 5232064
Alignment:
| Q |
1 |
tcaagatccttagaacttagtggacccaaatcttcacctaaaagatttctgaaatattggagacacatacatacacacacaattaatagtgtcgatatat |
100 |
Q |
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| T |
5232281 |
tcaagatccttagaacttagtggacccaaatcttcacctaaaagatttctgaaatattggagacacataca----cacacaattaatagtgtcgatatat |
5232186 |
T |
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| Q |
101 |
tggcaaatatttcactatagaaaatatgaaaatttaatgtaaaattctttacctctgtgctctttgaagattttcaaatctttgtttcagcttcaagtat |
200 |
Q |
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| T |
5232185 |
tggcaaatatttcactataaaaaatatgaaaatt-aatgtaaaaatctttacctctgtgctctttgaagattttcaaatctttgtttcagcttcaagtat |
5232087 |
T |
|
| Q |
201 |
tcacggtaactgctctgctttat |
223 |
Q |
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| T |
5232086 |
tcacggtaactgctctgctttat |
5232064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 305 - 456
Target Start/End: Complemental strand, 5231982 - 5231831
Alignment:
| Q |
305 |
tataaatcagaaatgttttttatacattagaagttgacatcatacaacgtattccgaccttattcgatacagtttctgattttatattaattttttctct |
404 |
Q |
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| T |
5231982 |
tataaatcagaaatattttttatacattagaagttgacatcagacaacgtattctgaccttattcgatacagtttctgattctatattaattttttctct |
5231883 |
T |
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| Q |
405 |
cttctaagaatccgaatgcactaaaatgagtgtattttatacggtgttgggt |
456 |
Q |
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| T |
5231882 |
cttctaagaatccgaatgcactaaaatgagtgtattttatacggtgttgggt |
5231831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 5655853 - 5655796
Alignment:
| Q |
162 |
ctttgaagattttcaaatctttgtttcagcttcaagtattcacggtaactgctctgct |
219 |
Q |
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| T |
5655853 |
ctttgaagagattcaaatcttgctttcagcttcaagtactcacggtaactgctctgct |
5655796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 333 - 451
Target Start/End: Complemental strand, 49936583 - 49936464
Alignment:
| Q |
333 |
agaagttgacatcatacaacgtattccgaccttattcgatacagtttctgattttatattaattttttctctcttctaagaatccgaatgcactaaaa-t |
431 |
Q |
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| T |
49936583 |
agaatttgacatcagacaccgtattcctatcatattatatacggtttccgattttatatgaattctttctctctcttcagaatctgaacacgctgaaact |
49936484 |
T |
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| Q |
432 |
gagtgtattttatacggtgt |
451 |
Q |
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| T |
49936483 |
gagtgtattttatacggtgt |
49936464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 399
Target Start/End: Original strand, 32552539 - 32552600
Alignment:
| Q |
338 |
ttgacatcatacaacgtattccgaccttattcgatacagtttctgattttatattaattttt |
399 |
Q |
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|||||| || ||| |||||||||| | |||| ||||| ||||||||||||||||||||||| |
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| T |
32552539 |
ttgacaccagacaccgtattccgaacacattctatacaatttctgattttatattaattttt |
32552600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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