View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8489_low_4 (Length: 470)
Name: NF8489_low_4
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 157 - 455
Target Start/End: Original strand, 28692436 - 28692744
Alignment:
| Q |
157 |
caggtgggaggatggaacattgtatacgacgggctaacatttgtgaccataagaggtgctggtcatcaagttcctacttttgctcccaaacaagctcttc |
256 |
Q |
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| T |
28692436 |
caggtgggaggatggaacattgtatacgacgggctaacatttgtgaccataagaggtgctggtcatcaagttcctacttttgctcccaaacaagctcttc |
28692535 |
T |
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| Q |
257 |
agctagttcgacatttcttagtcaataagaaattaccacaacatcctat---------------ttaatttatcattttgatgttactttgttacacatt |
341 |
Q |
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| T |
28692536 |
agctagttcgacatttcttagtcaataagaaattaccacaacatcctatttaattacttctctcttaatttatcattttcatgtta-tttgttacacatt |
28692634 |
T |
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| Q |
342 |
aagattgaatagttgtttgattctttttgggttaaaattaacccacgattgtttgtttgtactgttcactcaaactctctctcattcaagtgtgaatggt |
441 |
Q |
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| T |
28692635 |
aagattgaatagttgtttgattctttttgggttaaaattaacccacgattgtttgtttctactattcactcaaa----ctctcattcaagtgcgaatggt |
28692730 |
T |
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| Q |
442 |
tgtaccttatatat |
455 |
Q |
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| T |
28692731 |
tgtaccttttatat |
28692744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 28692286 - 28692371
Alignment:
| Q |
10 |
acatcaagaaaattgggacttcctatagttcaagattggactccatggtatactagtcgtcaggtaaaccaagttatgctaagttg |
95 |
Q |
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| T |
28692286 |
acattaagaaaattgggacttcctatagttcaagattggactccctggtatactagtcgtcaggtaaaccaagttgtgctaagttg |
28692371 |
T |
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