View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8489_low_7 (Length: 357)
Name: NF8489_low_7
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 36847873 - 36847546
Alignment:
| Q |
8 |
attatactcttttaacttgtacagttagtgttctacctttgcataggcacattgtcatctacatttgatgttcatttagataatgtcagtgcgtaaagga |
107 |
Q |
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| T |
36847873 |
attagactcttttaacttgtacagttagtgttctacctttgcataggcaccttgtcatctacatttgatgttcatttagataatgtcagtgcgtaaagga |
36847774 |
T |
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| Q |
108 |
tgagcagaatcaagcatagtttagtataaccaaatctttttcaagtgcaattgagactgcttaaccattttaatgcaaattgggcggagggatcatccct |
207 |
Q |
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| T |
36847773 |
tgagcagaatcaagcatagtttagtataaccaaatctttttcaagtgcaattgagactgcttaaccattttaatgcaaattgggcggagggatcatccct |
36847674 |
T |
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| Q |
208 |
actaagccaccttgctcaaactttctctaacattttaaaatttagcatcattagtgttatgtgtgagtgagaagtgcttttaggtagagaccacactatg |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
36847673 |
actaagccaccttgctcaaactttctctaacattttaaaatttagcatcattagtgttatgtg----tgagaagtgcttttaggtagagaccacactatg |
36847578 |
T |
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| Q |
308 |
ttacctagtccacgtgggttgcacagcctaga |
339 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
36847577 |
ttacctagtccacgtgggttgcacagcctaga |
36847546 |
T |
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