View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8489_low_8 (Length: 322)

Name: NF8489_low_8
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8489_low_8
NF8489_low_8
[»] chr4 (8 HSPs)
chr4 (1-246)||(21833753-21833998)
chr4 (70-191)||(1755035-1755156)
chr4 (70-175)||(641483-641588)
chr4 (42-183)||(3438082-3438223)
chr4 (70-239)||(55908104-55908273)
chr4 (42-226)||(1600930-1601114)
chr4 (114-226)||(53761252-53761364)
chr4 (70-183)||(547470-547583)
[»] chr6 (2 HSPs)
chr6 (6-244)||(6588700-6588941)
chr6 (129-167)||(6416576-6416614)
[»] chr3 (3 HSPs)
chr3 (36-226)||(51763835-51764025)
chr3 (7-148)||(514192-514333)
chr3 (4-166)||(13470184-13470346)
[»] chr1 (2 HSPs)
chr1 (70-244)||(19467876-19468050)
chr1 (70-167)||(17352198-17352295)
[»] chr5 (4 HSPs)
chr5 (70-241)||(28532268-28532439)
chr5 (70-191)||(32268029-32268150)
chr5 (70-226)||(41888937-41889096)
chr5 (79-184)||(41900966-41901071)
[»] chr7 (3 HSPs)
chr7 (16-226)||(10169525-10169735)
chr7 (16-226)||(10177050-10177260)
chr7 (4-244)||(10615078-10615318)
[»] chr2 (1 HSPs)
chr2 (70-239)||(1037040-1037209)
[»] chr8 (1 HSPs)
chr8 (124-184)||(27922699-27922759)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 21833998 - 21833753
Alignment:
Q  1 aactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21833998 aactggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataac 21833899  T
Q  101 tatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaact 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21833898 tatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccaagatatacaaagaacgcaaact 21833799  T
Q  201 aagacaagtcaaacccttcaaactcagtaatgagccaataaaatat 246  Q
    |||||||||||||||||||||||||| |||||||||||||||||||    
T  21833798 aagacaagtcaaacccttcaaactcactaatgagccaataaaatat 21833753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 1755035 - 1755156
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    ||||||||||||||   ||||||||||||||||||||||||||||| || ||| ||||||||| | |||||||||| || | ||||||||||||| || |    
T  1755035 ttggataacaaacatcggattccatcataactatagccggtgcaatgtccaagcacaagcctcttcaaaggaagacttttcattgcaatagagtacagca 1755134  T
Q  170 actcatccgagatatacaaaga 191  Q
     |||||||||||||| ||||||    
T  1755135 gctcatccgagatattcaaaga 1755156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 641483 - 641588
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||| |  |||||||| ||||| |||||||| |||| | ||||||||||| |||| |    
T  641483 ttggataacaaacacaagattccatcataagtatagccggtgcaattgcagaggacaagtctcgtcaaaggaaggcctttcattgcaatagaggagagaa 641582  T
Q  170 actcat 175  Q
    ||||||    
T  641583 actcat 641588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 42 - 183
Target Start/End: Complemental strand, 3438223 - 3438082
Alignment:
Q  42 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaagga 141  Q
    ||||||||||||||| | ||  ||||  |||||||||| | |||||||| || ||||||||||||||||||||||  | |||||||||||  | ||||||    
T  3438223 aagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaagga 3438124  T
Q  142 agaccttcccttgcaatagagtagagtaactcatccgagata 183  Q
    |||||| |  ||||||||||| | ||||| ||||||| ||||    
T  3438123 agacctccaattgcaatagaggaaagtaattcatccgggata 3438082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 55908273 - 55908104
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    |||||||||||| |  | |||||| ||||| ||||||||||||||||| | |||||||| ||  | |||||||||||| || ||||||||||  | || |    
T  55908273 ttggataacaaagagtatattccaacataattatagccggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca 55908174  T
Q  170 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaat 239  Q
    | |||||||||||   ||||||   |||| |||||||||| || || ||||||||||  || ||||||||    
T  55908173 attcatccgagatgcgcaaagacgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 55908104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 1600930 - 1601114
Alignment:
Q  42 aagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaagga 141  Q
    |||| |||||||||||| ||  ||||  ||||||||||||| ||  | ||||  |||||||||||| ||| ||| |   ||| |||||||| | ||||||    
T  1600930 aagaaccaaatgttggatacgttgacacttggataacaaactaactactccaatataactatagccagtgaaatatgcgaggtcaagcctcctcaaagga 1601029  T
Q  142 agaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 226  Q
     ||  |||| ||||||||||| |||| |||| ||||||||||  | || |   |||   ||||||||||||||||||||||||||    
T  1601030 ggattttcctttgcaatagaggagagcaactgatccgagatacgccaataggacaattcaagacaagtcaaacccttcaaactca 1601114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 226
Target Start/End: Complemental strand, 53761364 - 53761252
Alignment:
Q  114 atttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaa 213  Q
    |||| |||||||||| || || |||||||||| |||| |||||||||||||||| |||| ||| || ||    |||    ||||| ||||| ||||||||    
T  53761364 attttgaaggacaagacttgtcaaaggaagacattcctttgcaatagagtagagcaacttatctgaaattcctaaatgctgcaaattaagagaagtcaaa 53761265  T
Q  214 cccttcaaactca 226  Q
    |||||||||||||    
T  53761264 cccttcaaactca 53761252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 183
Target Start/End: Original strand, 547470 - 547583
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    ||||| || |||||| | |||||| ||||||||||||||   |||||| | ||||||||| |  | ||||||| | ||||| ||||||||||| |||| |    
T  547470 ttggacaaaaaacaagatattccagcataactatagccgaaacaattttggaggacaagctttctcaaaggaatagcttccattgcaatagaggagagca 547569  T
Q  170 actcatccgagata 183  Q
    ||  ||||||||||    
T  547570 acatatccgagata 547583  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 244
Target Start/End: Complemental strand, 6588941 - 6588700
Alignment:
Q  6 gacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacacc---atgacctttggataacaaacaaaagattccatcataacta 102  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||    |||||   ||||||||||| |||||| ||||| ||||  |    
T  6588941 gacaacatgttgatcattcagaaacctattatcttcaagatccaaatgttggaaacttttatgacacatggataacaaataaaagagtccattataataa 6588842  T
Q  103 tagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaa 202  Q
      ||| |  |||| |   || ||||| || || |||||||||| || ||||||||||| |||||| |||||||| ||||||| ||||| |  ||||| ||    
T  6588841 cggccagaacaatatttgagtacaagtcttgtcaaaggaagacgtttccttgcaatagtgtagagcaactcatcggagatattcaaagcagacaaaccaa 6588742  T
Q  203 gacaagtcaaacccttcaaactcagtaatgagccaataaaat 244  Q
    |||||||||||| |||||||||||  |||||| |||| ||||    
T  6588741 gacaagtcaaactcttcaaactcaccaatgagtcaattaaat 6588700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 167
Target Start/End: Original strand, 6416576 - 6416614
Alignment:
Q  129 cctcgttaaaggaagaccttcccttgcaatagagtagag 167  Q
    |||||| |||||||||||||||||||||||| |||||||    
T  6416576 cctcgtcaaaggaagaccttcccttgcaatacagtagag 6416614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 36 - 226
Target Start/End: Complemental strand, 51764025 - 51763835
Alignment:
Q  36 atcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgtt 135  Q
    ||||| ||||||||||||||  | ||  ||||  ||||||| |||||||| ||||||| ||||||||||||| |||||| || |||||||||||||  |     
T  51764025 atcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaaatttgaaggacaagccttttc 51763926  T
Q  136 aaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 226  Q
    ||| ||||||||||||||||||| |||||||| |||||||| ||||| | ||||     ||||  |||| |||||||||||||||||||||    
T  51763925 aaaagaagaccttcccttgcaatcgagtagagcaactcatcagagattttcaaacgcttcaaatcaagagaagtcaaacccttcaaactca 51763835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 514333 - 514192
Alignment:
Q  7 acaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagc 106  Q
    ||||||||||||||||| || || | |  ||||| ||||| ||||||||| |  |  | || ||||||||||||| |||||||||||||||| |  ||||    
T  514333 acaacatgttgatcattgaggaaaagggcatcttgaagattcaaatgttgtatccatttacatttggataacaaagaaaagattccatcatagccgtagc 514234  T
Q  107 cggtgcaatttcgaaggacaagcctcgttaaaggaagacctt 148  Q
    |||| ||| | || || ||||| ||| |||||||||||||||    
T  514233 cggtacaactacggagcacaagtctccttaaaggaagacctt 514192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 13470346 - 13470184
Alignment:
Q  4 tggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactat 103  Q
    |||| |||||||||||||||||||||||    |   |||||||| ||||||||||  || ||||  ||||||||||||| ||| |||||| |||||||||    
T  13470346 tggagaacatgttgatcattcagaaacaa---aagctcaagatctaaatgttggatgccttgacacttggataacaaacgaaatattccagcataactat 13470250  T
Q  104 ag---ccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtaga 166  Q
     |   ||    |||| ||| ||| ||| |||||| |||||||||||||||||||||||| ||||||    
T  13470249 gggggccaaaacaatgtcggagggcaaacctcgtcaaaggaagaccttcccttgcaatacagtaga 13470184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 244
Target Start/End: Complemental strand, 19468050 - 19467876
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    |||||||||||||||||||||||| |||| |||| |||   ||||| |   |||||||||||||| ||||| || ||||||| ||||||||||||||| |    
T  19468050 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 19467951  T
Q  170 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataaaat 244  Q
      ||||| ||||||| || | | | | || ||||| |||||||||||||||||||||| |||||| |||||||||    
T  19467950 tttcatcagagatattcagaaaccaccaagtaagagaagtcaaacccttcaaactcagcaatgagtcaataaaat 19467876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 167
Target Start/End: Original strand, 17352198 - 17352295
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag 167  Q
    |||||||||||| ||||  ||||| ||||||| ||||| ||| ||| | |||||||||| ||| | ||||||| ||| ||| ||||||||||| ||||    
T  17352198 ttggataacaaagaaaaagttccagcataactgtagccagtggaatattgaaggacaagtctcctgaaaggaaaaccctcctttgcaatagaggagag 17352295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 70 - 241
Target Start/End: Original strand, 28532268 - 28532439
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    ||||||||||||||||||| ||| ||||||||||||||   || ||||   ||||||||| |  | |||||||||||| |||||||||||| |||||| |    
T  28532268 ttggataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtagagca 28532367  T
Q  170 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaataa 241  Q
    ||||||| || ||||  ||| ||  ||||| |||||||||||||||||| |||||||  |||||| ||||||    
T  28532368 actcatcagaaatattaaaataatacaaaccaagacaagtcaaacccttgaaactcaccaatgagtcaataa 28532439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 191
Target Start/End: Original strand, 32268029 - 32268150
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    |||||||  ||| ||| |||||||  ||| |||||||||||||||| | | || ||||||||||| |||||||||| ||    |||||||||| |||| |    
T  32268029 ttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggagaacaagcctcgtcaaaggaagacattggtatgcaatagaggagagca 32268128  T
Q  170 actcatccgagatatacaaaga 191  Q
    ||||||| ||||||| ||||||    
T  32268129 actcatctgagatattcaaaga 32268150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 226
Target Start/End: Complemental strand, 41889096 - 41888937
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcg-aaggacaa--gcctcgttaaaggaagaccttcccttgcaatagagtaga 166  Q
    |||||||  ||||||||||||||| |||||||| |||||||||||||| | | ||| ||   ||| || ||| ||| ||||| | ||||||||||| | |    
T  41889096 ttggatagtaaacaaaagattccagcataactaaagccggtgcaattttgtagggagaaccacctagtcaaaagaaaaccttgcattgcaatagaggaaa 41888997  T
Q  167 gtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactca 226  Q
    | | |||||| ||||||| |||||||  ||||  ||||||||||||   |||||||||||    
T  41888996 gcatctcatcggagatattcaaagaaaacaaatcaagacaagtcaagtacttcaaactca 41888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 41901071 - 41900966
Alignment:
Q  79 aaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccg 178  Q
    |||||||  ||||||  ||||||||| |||||||||||| | || |||||||| || ||||| |||||||   |||||||||||  ||| ||| |||| |    
T  41901071 aaacaaataattccagaataactataaccggtgcaattttggagaacaagcctagtcaaaggtagaccttggattgcaatagagatgagaaacacatctg 41900972  T
Q  179 agatat 184  Q
    ||||||    
T  41900971 agatat 41900966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 10169735 - 10169525
Alignment:
Q  16 tgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaat 115  Q
    ||||||||||| || |||  || |||||||||||  ||||| | |||  |||  || ||| ||||||||||||||||| |||| || ||| |   |||||    
T  10169735 tgatcattcaggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaat 10169636  T
Q  116 ttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacc 215  Q
     ||  ||| |||||||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||||| || ||| | ||||  |||| ||||||||||    
T  10169635 atctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacc 10169536  T
Q  216 cttcaaactca 226  Q
    |||||||||||    
T  10169535 cttcaaactca 10169525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 10177260 - 10177050
Alignment:
Q  16 tgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataactatagccggtgcaat 115  Q
    ||||||||||| || |||  || |||||||||||  ||||| | |||  |||  || ||| ||||||||||||||||| |||| || ||| |   |||||    
T  10177260 tgatcattcaggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagctttagtccaagcaat 10177161  T
Q  116 ttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaactaagacaagtcaaacc 215  Q
     ||  ||| |||||||||| ||||| ||||||||||| |||||||||||||| |  ||||| ||||||| || ||| | ||||  |||| ||||||||||    
T  10177160 atctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttcatcagagatatccagagatctcaaagaaagagaagtcaaacc 10177061  T
Q  216 cttcaaactca 226  Q
    |||||||||||    
T  10177060 cttcaaactca 10177050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 10615078 - 10615318
Alignment:
Q  4 tggacaacatgttgatcattcagaaacatgttatcttcaagatccaaatgttggacaccatgacctttggataacaaacaaaagattccatcataacta- 102  Q
    |||||||||||||||||||||||||||     |  ||||||||||||||||||||  || ||||  |||||||| |||||| |||||||| ||||||||     
T  10615078 tggacaacatgttgatcattcagaaacgg---aagttcaagatccaaatgttggaagccttgacacttggataataaacaatagattccagcataactat 10615174  T
Q  103 --tagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatatacaaagaacgcaaact 200  Q
      | ||||   |||| ||| |||  || |||||| |||||||||||  |||||||||||||||| |  || | ||  ||||||| || | |  |||||      
T  10615175 ggtggccgaaacaatgtcggagggtaaacctcgtcaaaggaagacccacccttgcaatagagtaaaacaagttatttgagatattcataaactgcaaatc 10615274  T
Q  201 aagacaagtcaaacccttcaaactcagtaatgagccaataaaat 244  Q
    |||||||||||| |||||||||||||  |||||| |||||||||    
T  10615275 aagacaagtcaagcccttcaaactcaccaatgagtcaataaaat 10615318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 70 - 239
Target Start/End: Complemental strand, 1037209 - 1037040
Alignment:
Q  70 ttggataacaaacaaaagattccatcataactatagccggtgcaatttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagagta 169  Q
    |||||||||||| |  | |||||| ||||| |||||| |||||||||| | |||||||| ||  | |||||||||||| || ||||||||||  | || |    
T  1037209 ttggataacaaagagtatattccaacataattatagctggtgcaattttggaggacaagtcttctcaaaggaagacctcccattgcaatagaaaaaagca 1037110  T
Q  170 actcatccgagatatacaaagaacgcaaactaagacaagtcaaacccttcaaactcagtaatgagccaat 239  Q
    | |||||||| ||   ||||||   |||| |||||||||| || || ||||||||||  || ||||||||    
T  1037109 attcatccgaaatgcgcaaagatgacaaattaagacaagttaagccattcaaactcaccaacgagccaat 1037040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 27922699 - 27922759
Alignment:
Q  124 acaagcctcgttaaaggaagaccttcccttgcaatagagtagagtaactcatccgagatat 184  Q
    ||||||||||| ||||| |||| |||  | ||||||||| |||| ||||||||||||||||    
T  27922699 acaagcctcgtcaaaggtagacgttcggtggcaatagaggagagcaactcatccgagatat 27922759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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