View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8489_low_9 (Length: 304)
Name: NF8489_low_9
Description: NF8489
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8489_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 33973108 - 33973389
Alignment:
| Q |
10 |
gataatactacaagtatatgatgtggaatacttacttttgataggagattgttgaaattcatgtttgagtagtctctcatcaggtataaacatactaaat |
109 |
Q |
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| T |
33973108 |
gataatattacaagtatatgttgtggaatacttacatttgataggagattgttggaattcatgtttgagtagtctctcatcaggtataaacatgctaaat |
33973207 |
T |
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| Q |
110 |
gaatatataagagtagtgattaatatactcaatgaatatattgtgtcaaagtcttttagtgctatggatcattagttttgttgctccataatgttctcca |
209 |
Q |
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|||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33973208 |
gaatatataagagtggtgattaatatactaaatgaagatattgtgtcaaagtcttttagtgctatggatcattagttttgttgctccataatgttctcca |
33973307 |
T |
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| Q |
210 |
aaaacataatgtcaaannnnnnnagtgttcatgatcattaatttgttgttgctgctatagtgctccactaaaacatagttca |
291 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33973308 |
aaaacataatgtcaaatttttttagtgttcataataattaatttgttgttgctgctatagtgctccactaaaacatagttca |
33973389 |
T |
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