View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8490_high_2 (Length: 602)

Name: NF8490_high_2
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8490_high_2
NF8490_high_2
[»] chr2 (10 HSPs)
chr2 (66-586)||(10366199-10366720)
chr2 (5-65)||(34520579-34520639)
chr2 (6-60)||(17537773-17537827)
chr2 (5-54)||(10359413-10359462)
chr2 (17-65)||(23719972-23720020)
chr2 (17-65)||(24107644-24107692)
chr2 (17-67)||(6978116-6978166)
chr2 (17-67)||(37311517-37311567)
chr2 (276-369)||(15976784-15976877)
chr2 (17-60)||(33405042-33405085)
[»] chr1 (10 HSPs)
chr1 (5-67)||(49260543-49260605)
chr1 (6-60)||(15355649-15355703)
chr1 (6-60)||(35186292-35186346)
chr1 (6-67)||(39856108-39856169)
chr1 (17-65)||(37779432-37779480)
chr1 (17-67)||(23343801-23343851)
chr1 (6-60)||(38044069-38044123)
chr1 (17-67)||(40532253-40532303)
chr1 (17-67)||(24269244-24269294)
chr1 (21-63)||(24362942-24362984)
[»] chr3 (15 HSPs)
chr3 (6-67)||(46413152-46413213)
chr3 (6-67)||(49274711-49274772)
chr3 (6-60)||(34470925-34470979)
chr3 (6-67)||(11377845-11377906)
chr3 (6-67)||(51012150-51012211)
chr3 (6-67)||(14632759-14632820)
chr3 (6-60)||(10052221-10052275)
chr3 (6-60)||(47759816-47759870)
chr3 (6-67)||(44928752-44928813)
chr3 (9-67)||(50458117-50458175)
chr3 (17-65)||(30193829-30193877)
chr3 (17-65)||(18441668-18441716)
chr3 (17-65)||(19486742-19486790)
chr3 (17-65)||(42322283-42322331)
chr3 (17-67)||(51016580-51016630)
[»] chr4 (14 HSPs)
chr4 (6-60)||(47873324-47873378)
chr4 (5-65)||(51026652-51026712)
chr4 (6-56)||(2774314-2774364)
chr4 (8-60)||(36775349-36775401)
chr4 (6-60)||(22437921-22437975)
chr4 (6-47)||(45940845-45940886)
chr4 (11-60)||(49790800-49790849)
chr4 (17-67)||(43888366-43888416)
chr4 (223-330)||(45057223-45057329)
chr4 (17-60)||(49816290-49816333)
chr4 (6-38)||(2567910-2567942)
chr4 (21-60)||(21170770-21170809)
chr4 (29-67)||(17054305-17054343)
chr4 (201-369)||(22358001-22358170)
[»] chr8 (4 HSPs)
chr8 (6-67)||(26487740-26487801)
chr8 (6-67)||(42167801-42167862)
chr8 (17-65)||(19241533-19241581)
chr8 (17-65)||(19314717-19314765)
[»] chr7 (6 HSPs)
chr7 (6-67)||(22292130-22292191)
chr7 (6-65)||(43350256-43350315)
chr7 (6-67)||(17184483-17184544)
chr7 (5-60)||(42736281-42736336)
chr7 (17-67)||(20876920-20876970)
chr7 (287-329)||(37127004-37127046)
[»] chr6 (2 HSPs)
chr6 (6-65)||(12398081-12398140)
chr6 (17-67)||(32133543-32133593)
[»] chr5 (6 HSPs)
chr5 (6-60)||(6792311-6792365)
chr5 (6-60)||(7484357-7484411)
chr5 (5-60)||(1972668-1972723)
chr5 (17-65)||(1696094-1696142)
chr5 (17-59)||(4722966-4723008)
chr5 (17-65)||(36349179-36349227)


Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 66 - 586
Target Start/End: Original strand, 10366199 - 10366720
Alignment:
Q  66 gagttaacgagtttcacactaattgttagtgagaacttcagttcaatgtctcgatagaataattcaaatgacttacttgcatgttactaaagagagataa 165  Q
    ||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10366199 gagttaatgagttttacactaattgttagtgagaacttcagttcaatgtctggatagaataattcaaatgacttacttgcatgttactaaagagagataa 10366298  T
Q  166 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttttcttttatgagaatgtgccgaatg 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10366299 ggcggttgttcatgcactctcacaagaggtatttagattagctccgatcttaccaaaaatatatgctcaaaagttttcttttatgagaatgtgctgaatg 10366398  T
Q  266 gggatgttccaatccttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacat 365  Q
    | |||||||||||||| |||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||    
T  10366399 gagatgttccaatcctcaactagataatttcgaattagctctaagaggttggtataatgatgaaatttcagtgtctcctttaccactaaatgaactacat 10366498  T
Q  366 ggagaaaatcagaaaataacataannnnnnngaagcacacttaccaatggagagtaatttctgttagagtttgaatctctgcatgtaaaacgtttgacaa 465  Q
    ||||||||||||||||| ||||||       |||||||||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  10366499 ggagaaaatcagaaaatgacataatttttttgaagcacactcaccaacagagagtaatttccgttagagtttgaatctctgcatgtaaaacgtttgacaa 10366598  T
Q  466 accacactatcatagaaaccaaattaaaa-ttgctcgtaagagtgattacgcacaatactaccatagtctgcttgtctcggattcatcgtgcaccaccat 564  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  10366599 accacactatcatagaaaccaaattaaaatttgctcgtaagagtggttacgcacaataccaccatagtctgcttgtctcggattcatcgtgcaccactat 10366698  T
Q  565 caacatttaggaccaaagtgtt 586  Q
    || |||||||||||||||||||    
T  10366699 cagcatttaggaccaaagtgtt 10366720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 34520579 - 34520639
Alignment:
Q  5 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34520579 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 34520639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 17537773 - 17537827
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17537773 tgaacaagaagaaggagggcgacgacaagaagaaagaaaaatcaccgatgacatg 17537827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 10359413 - 10359462
Alignment:
Q  5 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgat 54  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10359413 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgat 10359462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 23719972 - 23720020
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  23719972 aaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 23720020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 24107644 - 24107692
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  24107644 aaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacg 24107692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 6978166 - 6978116
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  6978166 aaggagggtgacgacaagaagaaagaaaaattgccgatgacatggcacgga 6978116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 37311517 - 37311567
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||   ||||||||| ||||||    
T  37311517 aaggagggtgacgacaagaagaaagaaaaatcgttgatgacatggcacgga 37311567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 276 - 369
Target Start/End: Complemental strand, 15976877 - 15976784
Alignment:
Q  276 aatccttaactagataactttgaattagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag 369  Q
    |||||||||||| ||||||| |||||||||| | | |||||||||||| || |||  ||  |||||| ||| || |||| ||||||||||||||    
T  15976877 aatccttaactaaataacttcgaattagctccagggggttggcataatgattaaacctcgatgtctcctttgccgctaactgaactacatggag 15976784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 33405085 - 33405042
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||    
T  33405085 aaggagggtgatgacaagaagaaagaaaagtcacctatgacatg 33405042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 49260543 - 49260605
Alignment:
Q  5 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49260543 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49260605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 15355649 - 15355703
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15355649 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 15355703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 35186346 - 35186292
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35186346 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 35186292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 39856108 - 39856169
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||    
T  39856108 tgaacaagaagaaggagggtgatgacaagaagaaagaaaaatcgctgatgacatggcacgga 39856169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 37779480 - 37779432
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37779480 aaggagggtgacgacaagaagaaagaaaaatcgccgatgacatgacacg 37779432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 23343851 - 23343801
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||| ||||||||  |||||||||| ||||||    
T  23343851 aaggagggtgacgacaagaagaatgaaaaatcgtcgatgacatggcacgga 23343801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 38044069 - 38044123
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||| |||||||| |||||||||| ||||||||||||||||||  ||||||||||    
T  38044069 tgaataagaagaatgagggtgacggcaagaagaaagaaaaatcgtcgatgacatg 38044123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 40532253 - 40532303
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| ||||||    
T  40532253 aaggatggtgacgataagaagaaagaaaaatcgccgatgacatggcacgga 40532303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 24269244 - 24269294
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||| ||||||||||||||||||| | | ||||||||| ||||||    
T  24269244 aaggagggtggcgacaagaagaaagaaaaaacgctgatgacatggcacgga 24269294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 24362942 - 24362984
Alignment:
Q  21 agggtgacgacaagaagaaagaaaaatcaccgatgacatgaca 63  Q
    ||||||| |||||||||||||||||||| || |||||||||||    
T  24362942 agggtgatgacaagaagaaagaaaaatcgcctatgacatgaca 24362984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 46413152 - 46413213
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  46413152 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcactgatgacatgacacgga 46413213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 49274772 - 49274711
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  49274772 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatggcacgga 49274711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 34470925 - 34470979
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34470925 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 34470979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 11377845 - 11377906
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  11377845 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 11377906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 51012150 - 51012211
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  51012150 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 51012211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 14632820 - 14632759
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||    
T  14632820 tgaacaagaagaaggagggtaatgacaagaagaaataaaaatcaccgatgacatgacacgga 14632759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 10052221 - 10052275
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  10052221 tgaacaagaagaagaagggtgacgacaagaagaaagaaaaatcactgatgacatg 10052275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 47759816 - 47759870
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  47759816 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaaacgccgatgacatg 47759870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 44928813 - 44928752
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||| |||||||||||||||||||||||||||||  |||||||||| ||||||    
T  44928813 tgaacaagaagaatgagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 44928752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 50458117 - 50458175
Alignment:
Q  9 acaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||||    
T  50458117 acaagaagaatgacggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 50458175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 30193877 - 30193829
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||    
T  30193877 aaggagggtgacgacaagaagaaagaaaaatcgccgatgacattacacg 30193829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 18441716 - 18441668
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||    
T  18441716 aaggagggtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 18441668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 19486790 - 19486742
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||| |||||||||||||||||||| || |||||||||||||    
T  19486790 aaggagggtgatgacaagaagaaagaaaaatcgcctatgacatgacacg 19486742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 42322283 - 42322331
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||||| ||| ||||||||||||||||||||| ||||||||||| ||||    
T  42322283 aaggagtgtggcgacaagaagaaagaaaaatcgccgatgacatggcacg 42322331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 51016630 - 51016580
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||||| |||||||||||||||||||  |||||||| | ||||||    
T  51016630 aaggagggtgacaacaagaagaaagaaaaatcgtcgatgacacggcacgga 51016580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 47873378 - 47873324
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47873378 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 47873324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 5 - 65
Target Start/End: Original strand, 51026652 - 51026712
Alignment:
Q  5 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51026652 gtgaacaagaaaaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatggcacg 51026712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 2774364 - 2774314
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatga 56  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  2774364 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatga 2774314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 36775349 - 36775401
Alignment:
Q  8 aacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  36775349 aacaagaagaaggagggtgacaacaagaagaaagaaaaatcactgatgacatg 36775401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 22437975 - 22437921
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||||||||||||| ||||||||||||||||||  ||||||||||    
T  22437975 tgaacaagaagaaggagggtgacggcaagaagaaagaaaaatcgtcgatgacatg 22437921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 45940886 - 45940845
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaat 47  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  45940886 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaat 45940845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 49790800 - 49790849
Alignment:
Q  11 aagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  49790800 aagaagaaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatg 49790849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 43888366 - 43888416
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||||    
T  43888366 aaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacgga 43888416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 45057223 - 45057329
Alignment:
Q  223 aatatatgctcaaaagttttcttttatgagaatgtgccgaatggggatgttccaatccttaactagataactttgaattagctctaagaggttggcataa 322  Q
    ||||||||| |||  |||| ||| ||||||||||||  || ||| |||||  ||||||||||| |||||||||| ||||||||  | |||||||||||||    
T  45057223 aatatatgcacaacggtttccttctatgagaatgtggtga-tggagatgtctcaatccttaacaagataactttaaattagctgaaggaggttggcataa 45057321  T
Q  323 taatgaaa 330  Q
    | ||||||    
T  45057322 tgatgaaa 45057329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 49816290 - 49816333
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||| |||||||||||||||||||| |||||||||||    
T  49816290 aaggagggtgatgacaagaagaaagaaaaatcgccgatgacatg 49816333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 38
Target Start/End: Original strand, 2567910 - 2567942
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaaga 38  Q
    |||||||||||||||||||||||||||||||||    
T  2567910 tgaacaagaagaaggagggtgacgacaagaaga 2567942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 21170809 - 21170770
Alignment:
Q  21 agggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  21170809 agggtgatgacaagaagaaagaaaaatcgccgatgacatg 21170770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 17054305 - 17054343
Alignment:
Q  29 gacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  17054305 gacaagaagaaagaaaaatcgccgatgacatggcacgga 17054343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 369
Target Start/End: Original strand, 22358001 - 22358170
Alignment:
Q  201 gattagctccgatcttaccaaaaatatatgctcaaaagttttcttttatgagaatgtgccgaatggggatgttccaatccttaa-ctagataactttgaa 299  Q
    |||||||| | |||||  ||| ||||||| | ||| ||||| ||| | |||||||||   | |||| |||||  |||||||||| | ||||||||| |||    
T  22358001 gattagcttctatcttgacaagaatatatacgcaagagtttccttctctgagaatgtaatggatggagatgtcacaatccttaaacaagataacttggaa 22358100  T
Q  300 ttagctctaagaggttggcataataatgaaatttcagtgtctcttttaccactaaatgaactacatggag 369  Q
    ||| ||| |  ||||||||||||| ||||||| ||| | |||| ||  ||||||| |||| |||||||||    
T  22358101 ttaactccagaaggttggcataatgatgaaatctcaatttctccttcgccactaactgaattacatggag 22358170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 26487801 - 26487740
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  26487801 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 26487740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 42167801 - 42167862
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  42167801 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 42167862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 19241533 - 19241581
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  19241533 aaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19241581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 19314717 - 19314765
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  19314717 aaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 19314765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 22292191 - 22292130
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  22292191 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcgccgatgacatggcacgga 22292130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Original strand, 43350256 - 43350315
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  43350256 tgaacaagaagaaggagggtgacgacaagaagaaagaaatatcgccgatgacatggcacg 43350315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 17184544 - 17184483
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||| ||||||    
T  17184544 tgaacaagaagaaggagggtgaaaacaagaagaaagaaaaatcgccgatgacatggcacgga 17184483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 42736336 - 42736281
Alignment:
Q  5 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  42736336 gtgaacaagaagaaggagggtgaccacaagaagaaagaaaaatcgtcgatgacatg 42736281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 20876920 - 20876970
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    |||||||| ||||||||||||||||||||||| | ||||||||| ||||||    
T  20876920 aaggagggcgacgacaagaagaaagaaaaatcgctgatgacatggcacgga 20876970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 37127046 - 37127004
Alignment:
Q  287 agataactttgaattagctctaagaggttggcataataatgaa 329  Q
    |||||||||||||||| |||||||||||| ||||||| |||||    
T  37127046 agataactttgaattatctctaagaggttagcataatgatgaa 37127004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 6 - 65
Target Start/End: Complemental strand, 12398140 - 12398081
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    |||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  12398140 tgaataagaagaaggagggtgacgacaagaagaaagaaaaatcacggatgacatggcacg 12398081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 32133543 - 32133593
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacgga 67  Q
    ||||||||||| | |||||||||||||||||| || |||||||| ||||||    
T  32133543 aaggagggtgatgccaagaagaaagaaaaatcgcctatgacatggcacgga 32133593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 6792311 - 6792365
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  6792311 tgaacaagaagaaggagggtgacaacaaaaagaaagaaaaatcaccgatgacatg 6792365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 7484357 - 7484411
Alignment:
Q  6 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  7484357 tgaacaagaagaaggagggtgacgacaagaagaaagaaaaattgccgatgacatg 7484411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 1972723 - 1972668
Alignment:
Q  5 gtgaacaagaagaaggagggtgacgacaagaagaaagaaaaatcaccgatgacatg 60  Q
    ||||||||||||||||||||||||| || ||||||||||||||||| |||||||||    
T  1972723 gtgaacaagaagaaggagggtgacggcaggaagaaagaaaaatcactgatgacatg 1972668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 1696142 - 1696094
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  1696142 aaggagggtgacgacaagaagaaagaaaaatcgtcgatgacatggcacg 1696094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 4722966 - 4723008
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacat 59  Q
    ||||||||||||||||||||||||||||| || ||||||||||    
T  4722966 aaggagggtgacgacaagaagaaagaaaattcgccgatgacat 4723008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 36349179 - 36349227
Alignment:
Q  17 aaggagggtgacgacaagaagaaagaaaaatcaccgatgacatgacacg 65  Q
    ||||||||| |||||| ||||||||||||||| ||||||||||| ||||    
T  36349179 aaggagggtcacgacaggaagaaagaaaaatcgccgatgacatggcacg 36349227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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