View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8490_high_3 (Length: 472)

Name: NF8490_high_3
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8490_high_3
NF8490_high_3
[»] chr2 (2 HSPs)
chr2 (20-472)||(12198798-12199250)
chr2 (20-320)||(12197076-12197380)


Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 472
Target Start/End: Original strand, 12198798 - 12199250
Alignment:
Q  20 atccgaactgttatcggaggtgtttttatcggaggaagaagatagttggggttaggtgccagaaaaaggtggtgtgttttggggtcaaatcaagccatac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12198798 atccgaactgttatcggaggtgtttttatcggaggaagaagatagttggggttaggtgccagaaaaaggtggtgtgttttggggtcaaatcaagccatac 12198897  T
Q  120 tttccta-ctaaaatccatcttatcctgtcagagaggccggcttcggaaacatatattttcaatcagttattgaagagcatggcaccttcaaaagtctgt 218  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12198898 tttcctagctaaaatccatcttatcatgtcagagaggccggcttcggaaacatatattttcaatcagttattgaagagcatggcaccttcaaaagtctgt 12198997  T
Q  219 gcgttctcttggcagttacttcttgatcgcattccaacaaggatgaatctgtcagaggagttatccctcaatcagattcagatatgttggactgtgtttt 318  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12198998 gcgttctcttggcagttacttcttgatcgcattccgacaaggatgaatctgtcagaggagttatccctcaatcagattcagatatgttggactgtgtttt 12199097  T
Q  319 gtgtggatgggaccaaaaaactacgtccatcaatttctacacttgagttttttgcatccgtctgttgttgtgctttttcctggtggccaggtgtcgtcat 418  Q
    |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||  ||| |||||  | |||||||||||||||||||||||    
T  12199098 gtgtggatgggaccaaaaaattctgtccatcaatttctacacttgagttttttgcatccgtcatttggtgtgcggtgtcctggtggccaggtgtcgtcat 12199197  T
Q  419 tgtctcccgaccagacttgtttgtgtcttgttcttgtttatctgggtcttgcag 472  Q
    |||| ||| ||||||||||||||| ||||||| || ||||||||||||| ||||    
T  12199198 tgtcaccccaccagacttgtttgtttcttgtt-ttttttatctgggtctggcag 12199250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 12197076 - 12197380
Alignment:
Q  20 atccgaactgttatcggaggtgtttttatcggaggaagaagatagttggggttaggtgccagaaaaaggtggtgtgttttggggtcaaatcaagccatac 119  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||| |||||    
T  12197076 atccgaactgttaacagaggtgtttttatcggaggaagaagatagttgggattgggtgccagaaaaaggttgtgtgttttggggtcaaatcaagtcatac 12197175  T
Q  120 tttccta-ctaaaatccatcttatcctgtcagagaggccggcttcggaaacatatattttcaatcagttattgaagagcatggcaccttcaaaagtctgt 218  Q
    ||||||| |||||||||||||||||| ||||||||||| |||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  12197176 tttcctagctaaaatccatcttatcccgtcagagaggctggcttcggaagcatatagtttcaaccagttatggaagagcatggcaccttcaaaagtctgt 12197275  T
Q  219 gcgttctcttggcagttacttcttgatcgcattccaacaaggatgaatctgt----cagaggagttatccctcaatcagattcagatatgttggactgtg 314  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||||||||    
T  12197276 gcgttctctt-gcagttacttcttgatcgcattccaacaaggatgaatctgtcccgcagaggggttatccctcaatcagattcagatatgttggactgtg 12197374  T
Q  315 ttttgt 320  Q
    ||||||    
T  12197375 ttttgt 12197380  T

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