View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_1 (Length: 705)
Name: NF8490_low_1
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 354
Target Start/End: Complemental strand, 45422157 - 45421809
Alignment:
| Q |
8 |
agtgggttggtcatggttgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaat |
107 |
Q |
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| T |
45422157 |
agtgggttggtcatggtcgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctctctcaaat |
45422058 |
T |
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| Q |
108 |
atataagcac--atataattttgacctttataattgtggctttcaagggaagaatgttcacgtattccatatatgtatggtcacccattaatttggtaga |
205 |
Q |
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| T |
45422057 |
atataagcacgtatataattttgacctttatgattgtggctttcaagggaagaatgttcacgtattgcatatatgtatggtcacccattaatttggtaga |
45421958 |
T |
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| Q |
206 |
attacgatgtgttatagtaattttcaaaaataaaactaagttttagtacttggtggagagnnnnnnnttagaatttagagtttaaaaatacaataatgct |
305 |
Q |
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| T |
45421957 |
attacgatgtgttatagtaattttcaaaaataaaactaagtttaagtacttggtggagaaaaaaaaaatagaatttagagtttaaaaatacaataatgct |
45421858 |
T |
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| Q |
306 |
agatcaagcgaattattcatccagaatttatcccgaaaacatttctatt |
354 |
Q |
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| T |
45421857 |
agatcaaacgaattattcatccagaatttatcccgaaaacatttctatt |
45421809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 351 - 700
Target Start/End: Complemental strand, 45421735 - 45421383
Alignment:
| Q |
351 |
tattcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaattcaaaaatatatttcatcgaattcatttgtaatttcatttacgt |
450 |
Q |
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| T |
45421735 |
tattcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaactcaaaaatatatttcatcgaattcatttgtaatttcatttatgt |
45421636 |
T |
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| Q |
451 |
gacatttgtaatttcatttatcagatgaaaattttaagaaaattttttgttgataatatttgatgtccatgac----agcaacaaatataaatggatttc |
546 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
45421635 |
gacatttgtaatttcatttatcagatgaaaattttaagaaaaaaatttgataataatatttgatgtccatgacacttagcaacaaatataaatggattta |
45421536 |
T |
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| Q |
547 |
tctgnnnnnnngtctctaacttttcatctatttcaatttttactaattctaatttgtttcacccatcaaattgataggccatggcaagaacaatgattgt |
646 |
Q |
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| T |
45421535 |
tct-tttttttgtctctaaattttcatctatttcaatttttactaattctaatttgtttcacccatcaaattgataggccatggcaagaacaatgattgt |
45421437 |
T |
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| Q |
647 |
gtctacaaatcaaatgatagatagatggactagccagataaaattaggcaaaca |
700 |
Q |
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| T |
45421436 |
gtctacaaatcaaatgatagatagatggactagccagataaaattaggcaaaca |
45421383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 45412754 - 45412669
Alignment:
| Q |
8 |
agtgggttggtcatggttgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggt |
93 |
Q |
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| T |
45412754 |
agtgggttggtcatggtcgagggtaatgattgggtacgtcaccgtcacattgttgcaccagcattcaatccccttaacctcaaggt |
45412669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 639 - 697
Target Start/End: Complemental strand, 45412344 - 45412286
Alignment:
| Q |
639 |
atgattgtgtctacaaatcaaatgatagatagatggactagccagataaaattaggcaa |
697 |
Q |
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| T |
45412344 |
atgattgagtctacaaatcaaatgatagatagatggactagccaaataaactttggcaa |
45412286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 354 - 700
Target Start/End: Complemental strand, 26836800 - 26836450
Alignment:
| Q |
354 |
tcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaattcaaaaatatatttcatcgaattcatttgtaatttcatttacgtgac |
453 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26836800 |
tcttaaaaataagcatgatagctattcacaattttgtgaaactcatcatcaattcaaaaatatatttcatcgaattcatttgtaatttcatttacgtgac |
26836701 |
T |
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| Q |
454 |
atttgtaatttcatttatcagatgaaaattttaagaaaattttttgttgataatatttgatgtccatgac----agcaacaaatataaatggatttctct |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
26836700 |
atttgtaatttcatttatcagatgaaaattttaagaaaaaaatttgttaataatatttgatgtccatgacacatagcaacaaatataaatggatttatct |
26836601 |
T |
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| Q |
550 |
gnnnnnnngtctctaacttttcatcta--tttcaatttttactaattctaatttgtttcacccatcaaattgataggccatggcaagaacaatgattgtg |
647 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26836600 |
--ttctttgtctctaaattttcatctatttttcaatttttactaattctaatttgtttcacacatcaaattgataggccatggcaagaacaatgattgtg |
26836503 |
T |
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| Q |
648 |
tctacaaatcaaatgatagatagatggactagccagataaaattaggcaaaca |
700 |
Q |
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| T |
26836502 |
tctacaaatcaaatgatagatagatggactagccagataaaattaggcaaaca |
26836450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 14 - 183
Target Start/End: Complemental strand, 26837003 - 26836816
Alignment:
| Q |
14 |
ttggtcatggttgagggcaatgattgggttcgtcaccgccacattattgcaccagcattcaatcctcttaacctcaaggttctctc-------------- |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
26837003 |
ttggtcatggttgagggcaatgattgggttcgtcaccgcaacattgttgcaccatcattcaatcctcttaacctcaaggttctctctctctctctctctc |
26836904 |
T |
|
| Q |
100 |
--tctcaaatatataagcac--atataattttgacctttataattgtggctttcaagggaagaatgttcacgtattccatatatgtat |
183 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| |
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| T |
26836903 |
tctctcaaatatataagcacatatataattttgacctttataattgtggctttcaagggaagaatgttcatgtattgcatatacgtat |
26836816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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