View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8490_low_10 (Length: 438)

Name: NF8490_low_10
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8490_low_10
NF8490_low_10
[»] chr2 (1 HSPs)
chr2 (129-424)||(32867177-32867472)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 129 - 424
Target Start/End: Original strand, 32867177 - 32867472
Alignment:
Q  129 gcttatgggtcttcaaaatagatccagatcaagcaacttcannnnnnnnaggaacattaagatcaagatccaacagtctctgacgtggcacaccttcata 228  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32867177 gcttatgggtcttcaaaatagatccagatcaagcaacttcaggtggtggaggaacattaagatcaagatccaagagtctctgacgtggcacaccttcata 32867276  T
Q  229 atcaacaacggaggaagaagaaccagagtcactctgcacggcggcgcgtcgaaaatcggccatgggacgttcaaatccacacatctcacgacggccaacg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32867277 atcaacaacggaggaagaagaaccagagtcactctgcacggcggcgcgtcgaaaatcagccatgggacgttcaaatccacacatctcacgacggccaacg 32867376  T
Q  329 gttagggctgtttcagcacgtgcgaatgcgtcaaaaaacaaaacaggacgcgccaccggataggccaaggtaacaccaccgtgggaggaggagaat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32867377 gttagggctgtttcagcacgtgcgaatgcgtcaaaaaacaaaacaggacgcgccaccggataggccaaggtaacaccaccgtgggaggaggagaat 32867472  T

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