View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_12 (Length: 432)
Name: NF8490_low_12
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 410
Target Start/End: Original strand, 39357190 - 39357608
Alignment:
| Q |
14 |
agactcccaccacatatgatnnnnnnnntatacatcagatgcataccaatcagcaattaacacaataaaaatctcaacaatgaaaatttcattacaaaaa |
113 |
Q |
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| T |
39357190 |
agactcccaccacatatgataaaaaaaatatacatcagatgcataccaatcagcaattaacacaataaaaatctcaacaatgaaaatttcattacaaaaa |
39357289 |
T |
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| Q |
114 |
tgagttaagggaatagttttcaccgacaacaaaaatgagaacccccaggtaaattgggcattttgatctccactaagttcatattagggtacaataaaaa |
213 |
Q |
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| T |
39357290 |
tgagttaagggaatagttttcaccgacaacaaaaatgagaacccacaagtaaattgggcattttgatctccactaagttcatattaggatacaataaaaa |
39357389 |
T |
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| Q |
214 |
acaacaatgaaatccaataaaagccccaattttttcatttaaaaagctgaattgagcatcccaaatcataaaggcagacaaataagagaatgaaacacaa |
313 |
Q |
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| T |
39357390 |
acaacaatgaaatccaataaaagccccaattttttcatttaaaaagctgaattgagcatcccaaatcataaaggcagataaataagagaatgaaacacaa |
39357489 |
T |
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| Q |
314 |
acaatatatctatatccttaa----------------------atcttataagttaaaatccaaagcaactaaatccatatccactcttaaatcttaaag |
391 |
Q |
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|| |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39357490 |
actatatatctatatccttaaaaactagcttctgaaattaaatattttataagttaaaatccaaagcaactaaatccatatccactcttaaatcttaaag |
39357589 |
T |
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| Q |
392 |
aagtcacaatattttaatg |
410 |
Q |
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|||||||||||||| |||| |
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| T |
39357590 |
aagtcacaatatttcaatg |
39357608 |
T |
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