View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_14 (Length: 378)
Name: NF8490_low_14
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 36 - 365
Target Start/End: Original strand, 34571401 - 34571736
Alignment:
| Q |
36 |
tagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccggatacaccttca------atctgaaagtgtcggtgcaacatagatttacggtgataac |
129 |
Q |
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| T |
34571401 |
tagtttgcgaaaagaaaagtgtcttgttggtgttaggcaccggatacaccttcaatttcaatctgaaagtgtcggtgcaacatagatttacggtgataac |
34571500 |
T |
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| Q |
130 |
aagtacaataatagtaggttcaaataacatgcttacccatttgaaatctagcttgcacaaaatgagataccatatgataaacacgctccaactggataac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571501 |
aagtacaataatagtaggttcaaataacatgcttacccatttgaaatctagcttgcacaaaatgagataccatatgataaacacgctccaactggataac |
34571600 |
T |
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| Q |
230 |
taaaattccacttgttactagttctcctaagctatctggcagttcgatccctctaaattccaatccccgaggttgacttggaccacaccttaaaatatgc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34571601 |
taaaattccacttgttactagttctcctaagctatctggcagttcgatccctctaaattccaatccccgaggttgacttggaccacaccttaaaatatgc |
34571700 |
T |
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| Q |
330 |
agcaacacatataaacacataaaaaatgtggaaact |
365 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
34571701 |
agcaacacatataaacacataaaaaatgtggaaact |
34571736 |
T |
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