View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_15 (Length: 373)
Name: NF8490_low_15
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 28242124 - 28242281
Alignment:
| Q |
18 |
gagtattcaatttgtcaaacacatgcatgactcctctttaagaaacaacaatgaaaaggatagaaggatgaacataataccttggattagaaaattgtac |
117 |
Q |
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| T |
28242124 |
gagtattcaatttgtcaaacacatgcatgactcctctttaagaaacaacaatgaaaaggttagaaggatgaacttaataccttggattagaaaattgtac |
28242223 |
T |
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| Q |
118 |
ctcctacaattgtttcaaagcatccctgccattataggctaattaaattgggaattgg |
175 |
Q |
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| T |
28242224 |
ctcctacaattgtttcaaagcatccctgccattataggataattaaattgggaattgg |
28242281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 232 - 355
Target Start/End: Original strand, 28242335 - 28242461
Alignment:
| Q |
232 |
gctctgctttatactagtattttctagttttcttagttatatacattaaatggctctcacacaatcaggaacata---aacaacacaccaacaccagtgc |
328 |
Q |
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| T |
28242335 |
gctctgctttatactagtattttctagttttcttagttatatacatgaaatggctctcacacaatcaggaacataaacaacaacacaccaacaccagtgc |
28242434 |
T |
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| Q |
329 |
cacctatatggtttcaacacacaacta |
355 |
Q |
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| T |
28242435 |
cacctatatggtttcaacacacaacta |
28242461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 2371054 - 2371212
Alignment:
| Q |
18 |
gagtattcaatttgtcaaacacatgcatgactcctctttaagaaacaacaatgaaaaggatagaagg----atgaacataataccttggattagaaaatt |
113 |
Q |
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| T |
2371054 |
gagtattcaatttgtcaaacacacacatgactcctctttaagaaacaaaaatggaaaggatggtacgtatgatgaacataataccttggataacaaaatt |
2371153 |
T |
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| Q |
114 |
gtacctcctacaattgtttcaaagcatccctgccattataggctaattaaattgggaat |
172 |
Q |
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| T |
2371154 |
gtacctcctacaattgtttcaaagcatccctgccattataagctaattaaattgggaat |
2371212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 353
Target Start/End: Original strand, 2371294 - 2371409
Alignment:
| Q |
240 |
ttatactagtattttctagttttcttagttatatacattaaatggctctcacacaatcaggaacataaacaacacaccaacacca--gtgccacctatat |
337 |
Q |
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| T |
2371294 |
ttatattagtattttctaattttcttaattatataaatgaaatggctctcacataatcaggaacataaacaacaaaccaacacaatggtaccacctatat |
2371393 |
T |
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| Q |
338 |
ggtttcaacacacaac |
353 |
Q |
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| T |
2371394 |
ggattcaacacacaac |
2371409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 132
Target Start/End: Complemental strand, 49567576 - 49567489
Alignment:
| Q |
43 |
catgactcctctttaagaaacaacaatgaaaaggatagaaggatgaacataataccttggattagaaaattgtacctcctacaattgttt |
132 |
Q |
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| T |
49567576 |
catgactcctcttt--gaaactataatgaaaaggatagttcgatgaacataaaaccttggatcagaaaactgtacctcctgcgattgttt |
49567489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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