View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8490_low_18 (Length: 351)

Name: NF8490_low_18
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8490_low_18
NF8490_low_18
[»] chr8 (2 HSPs)
chr8 (35-285)||(26256547-26256797)
chr8 (283-332)||(35044435-35044484)
[»] chr4 (4 HSPs)
chr4 (283-339)||(33959645-33959701)
chr4 (283-339)||(26341439-26341495)
chr4 (283-331)||(22405434-22405482)
chr4 (283-339)||(26342379-26342435)
[»] chr2 (3 HSPs)
chr2 (283-339)||(41432831-41432887)
chr2 (283-339)||(35112824-35112880)
chr2 (283-339)||(35113764-35113820)
[»] chr6 (1 HSPs)
chr6 (283-340)||(29299024-29299081)
[»] chr5 (3 HSPs)
chr5 (283-339)||(3969328-3969384)
chr5 (283-339)||(2312941-2312997)
chr5 (295-339)||(2313881-2313925)
[»] chr7 (3 HSPs)
chr7 (283-339)||(37034796-37034852)
chr7 (283-339)||(39323838-39323894)
chr7 (283-339)||(37035736-37035792)
[»] chr3 (4 HSPs)
chr3 (283-339)||(24163701-24163757)
chr3 (283-339)||(24162300-24162356)
chr3 (297-339)||(33218929-33218971)
chr3 (291-331)||(55201953-55201993)
[»] chr1 (2 HSPs)
chr1 (283-340)||(29117461-29117518)
chr1 (295-331)||(5763092-5763128)


Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 35 - 285
Target Start/End: Original strand, 26256547 - 26256797
Alignment:
Q  35 tcaaggggtgtgttttgatacaattttataaactttctctattggagtttagattaattttttaaaataccactaatttgtataaaataaagaactgttt 134  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  26256547 tcaaggggtgtgtttggatacaattttataaactgtctctattggagtttagattaattttttaaggtactactaatttgtataaaataaagaactgttt 26256646  T
Q  135 ctagaaacattaaataagtgaggtatcaaatggatgatacttttttgttgagatgaacttggatgatgaaaattttacggggatactaaaagtaatttta 234  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26256647 ctagaaacgttaaataagtgaggtatcaaatggatgacacttttttgttgagatgaacttggatgatgaaaattttacggggatactaaaagtaatttta 26256746  T
Q  235 acctaaatttaaaagaaaggtaaaaattatgcatttgaaggaatttgcata 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26256747 acctaaatttaaaagaaaggtaaaaattatgcatttgaaggaatttgcata 26256797  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 332
Target Start/End: Complemental strand, 35044484 - 35044435
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaata 332  Q
    |||||||||||||||||||| ||||| ||||| ||  |||||||||||||    
T  35044484 atatatatagaggacatatctagtgagaatgacttctttatgtgagaata 35044435  T

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Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 33959645 - 33959701
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  33959645 atatatatagaggacatatccagtgagaatgaatttgttatgtgagaatatgagaat 33959701  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 26341439 - 26341495
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||| |||| ||||||| ||||| ||||||||| ||||||||||||||||||||    
T  26341439 atatatagagagaacatatctagtgagaatgagtttcttatgtgagaatatgagaat 26341495  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 22405434 - 22405482
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaat 331  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||||||||    
T  22405434 atatatatatatgacatatctagtgaaaatgagtttattatgtgagaat 22405482  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 26342435 - 26342379
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||||| || ||||||| ||||| |||||||||||||||| ||||| |||||||    
T  26342435 atatatatatagaacatatctagtgagaatgagtttgttatgtaagaatgtgagaat 26342379  T

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Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 41432887 - 41432831
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  41432887 atatatatagaggacatatctagtgagaatgagtttgttatgtgagaatatgagaat 41432831  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 35112824 - 35112880
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||||| |  ||||||| ||||| ||||||||||||||||||||||||||||||    
T  35112824 atatatatatataacatatctagtgagaatgagtttgttatgtgagaatatgagaat 35112880  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 35113820 - 35113764
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||  ||| ||||||| ||||| |||||||||||||||| ||||| |||||||    
T  35113820 atatatagtgagaacatatctagtgagaatgagtttgttatgtaagaatgtgagaat 35113764  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 283 - 340
Target Start/End: Original strand, 29299024 - 29299081
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaata 340  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||    
T  29299024 atatatatataggacatatctagtgagaatgagtttgttatgtgagaatatgagaata 29299081  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 3969384 - 3969328
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||    
T  3969384 atatatatagaggacatatctagtgagaatgggtttgttatgtgagaatatgagaat 3969328  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 2312941 - 2312997
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||||| || ||||||| ||||| ||||||||||||||||||||||||||||||    
T  2312941 atatatatatagaacatatctagtgagaatgagtttgttatgtgagaatatgagaat 2312997  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Complemental strand, 2313925 - 2313881
Alignment:
Q  295 gacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||| ||||| |||||||||||||||| ||||| |||||||    
T  2313925 gacatatctagtgagaatgagtttgttatgtaagaatgtgagaat 2313881  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 37034796 - 37034852
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||||||    
T  37034796 atatatatagagaacatatctagtgagaatgagtttcttatgtgagaatatgagaat 37034852  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 39323894 - 39323838
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||||| |||||||||||| | | ||||| ||||||||||||||||||||||||    
T  39323894 atatatatataggacatatccaataagaatgaatttgttatgtgagaatatgagaat 39323838  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 37035792 - 37035736
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||||| || ||||||| ||||| |||||||||||||||| ||||| |||||||    
T  37035792 atatatatatagaacatatctagtgagaatgagtttgttatgtaagaatgtgagaat 37035736  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 283 - 339
Target Start/End: Complemental strand, 24163757 - 24163701
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||||||||| ||||||| ||||| |||||||||||||||||||||| |||||||    
T  24163757 atatatatagagaacatatctagtgagaatgagtttgttatgtgagaatgtgagaat 24163701  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 24162300 - 24162356
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    ||||||||| || ||||||| ||||| |||||||||||||||||||||| |||||||    
T  24162300 atatatatatagaacatatctagtgagaatgagtttgttatgtgagaatgtgagaat 24162356  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 339
Target Start/End: Complemental strand, 33218971 - 33218929
Alignment:
Q  297 catatccagtgaaaatgagtttgttatgtgagaatatgagaat 339  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  33218971 catatctagtgagaatgagtttgttatgtgagaatatgagaat 33218929  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 55201993 - 55201953
Alignment:
Q  291 agaggacatatccagtgaaaatgagtttgttatgtgagaat 331  Q
    |||| ||||||| ||||| ||||||||||||||||||||||    
T  55201993 agagaacatatctagtgagaatgagtttgttatgtgagaat 55201953  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 340
Target Start/End: Complemental strand, 29117518 - 29117461
Alignment:
Q  283 atatatatagaggacatatccagtgaaaatgagtttgttatgtgagaatatgagaata 340  Q
    |||||||||||||||||||| ||||| ||||| ||  |||||||||||| | ||||||    
T  29117518 atatatatagaggacatatctagtgagaatgatttctttatgtgagaatgtaagaata 29117461  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 5763128 - 5763092
Alignment:
Q  295 gacatatccagtgaaaatgagtttgttatgtgagaat 331  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  5763128 gacatatctagtgagaatgagtttgttatgtgagaat 5763092  T

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