View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_19 (Length: 349)
Name: NF8490_low_19
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 346
Target Start/End: Complemental strand, 49676536 - 49676206
Alignment:
| Q |
16 |
gtttcttcctactctgtcaatcggaccaccatgctaattttattcccttttgatatgataaaaaatctcttaattatgtactatagtaataagataaact |
115 |
Q |
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| T |
49676536 |
gtttcttgctactctgtcaatcggaccaccatgctaattttattcccttttgatatgataaaaaatctcttaagtatgtactataggaataagataaact |
49676437 |
T |
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| Q |
116 |
ct-aaagtataaataatactatatgattaccctgaattttcttannnnnnnncataaatcatcataacccaattacttacaagagaatgaacatagagaa |
214 |
Q |
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| T |
49676436 |
cttaaagtataaataatactatatgattacactgaattttcttattttttttcataaatcatcataacccaattacttacaagagaatgaacatagagaa |
49676337 |
T |
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| Q |
215 |
gtatcaaataatgtagtatataggtgcaattctgctctggctaaatatatatatagtaacgaattcaaattatgcaattggagaaaagaaaacacaataa |
314 |
Q |
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| T |
49676336 |
gtatcaaataatgtagtatataggtgcaattctgctctagctaattatat-tatagtaacgaattcaaattatgcaatgggagaaaagaaaacacaataa |
49676238 |
T |
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| Q |
315 |
aggaaatatgctaattgaccatattacttttc |
346 |
Q |
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| T |
49676237 |
aggaaatatgctaattgaccagattacatttc |
49676206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 262
Target Start/End: Complemental strand, 49689052 - 49688976
Alignment:
| Q |
185 |
aattacttacaagagaatgaacatagagaagtatcaaataatgtagtatataggtgcaattctgctctggctaaatat |
262 |
Q |
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| T |
49689052 |
aattaattataagagaatgaacgtagataagtatcaa-tattgtagaatataggtgcaattctgctgtggttaaatat |
49688976 |
T |
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