View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_20 (Length: 329)
Name: NF8490_low_20
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 147 - 302
Target Start/End: Original strand, 27970579 - 27970734
Alignment:
| Q |
147 |
tgtttacctgttctcatcagaatctgggaggatacacaaaaacttcccaggcacagtcaaagcagcccaagtacaaagcaataatcctaaagtaagttca |
246 |
Q |
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| T |
27970579 |
tgtttacctgttctcatcagaatctgggaggatacacaaaaacttcccaggcacattcaaagcagcccaagtacaaagcaataaacctaaagtaagttca |
27970678 |
T |
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| Q |
247 |
atcacaacctacatattcaaaatccaacactcagaaaattccaataaacaccaaac |
302 |
Q |
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| T |
27970679 |
atcacaacctacatattcaaaatccaacactcagaaaattccaataaacaccaaac |
27970734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 27970446 - 27970531
Alignment:
| Q |
18 |
agttgtttatccaaataatctcttgctaatgataaatcaatgacacgacaaaatcaactcaaccactagcttaaattcacaatcac |
103 |
Q |
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| T |
27970446 |
agttgtttatccaaataatctcttgctaatgataaatcaatgacacgacaaaatcaactcaaccactagcttaaattcacaatcac |
27970531 |
T |
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