View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_24 (Length: 237)
Name: NF8490_low_24
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_24 |
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| [»] scaffold0174 (1 HSPs) |
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Alignment Details
Target: scaffold0174 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 32565 - 32345
Alignment:
| Q |
5 |
caaatatttactatacaatatacaatatctaatagctcttttgttcttgtatttgtcttgtttcataatcactataaataatgttgattgaattcagatt |
104 |
Q |
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| T |
32565 |
caaatatttactatacaatatacaatatctaatagctctttagttcacgtatttgtcttgtttcatgatcactataaataatgctaattgaattcagatt |
32466 |
T |
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| Q |
105 |
tcactacaattaaactcttggtaagtcaagaatgaaaactaaacctttaatcttcgtgttctgtgtttgctcactaattatcatcactgttgtggcaatc |
204 |
Q |
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| T |
32465 |
tcactacaattaaactcttggtaagtcaagaatgaaaactaaacctttaatcttcgtgttctttgtttgctcactaattatcatcactgttgtggcaatc |
32366 |
T |
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| Q |
205 |
gattcatcgaaaggtgggaat |
225 |
Q |
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||||||||||||||||||||| |
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| T |
32365 |
gattcatcgaaaggtgggaat |
32345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 24895563 - 24895338
Alignment:
| Q |
2 |
agtcaaatatttactatacaatatacaatatctaata--gctcttttgttcttgtatttgtcttgtttcataatcactataaataatgttgattgaattc |
99 |
Q |
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| T |
24895563 |
agtcaaatttttactatgcattatatattatctaacaaggctcttttgttcatatatttatcttgtcccatgatcactataaataatgttgattgaattc |
24895464 |
T |
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| Q |
100 |
agatttcactacaattaaactcttggtaagtcaagaatgaaaactaaacctttaatcttcgtgttctgtgtttgctcactaattatcatcactgttgtgg |
199 |
Q |
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| T |
24895463 |
agattttactacaattaaactccaagtaaatcaaccatgaaaactaaaccgttgatcttcgtgttctttctttgcccgctaattatcatctctgttatgg |
24895364 |
T |
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| Q |
200 |
caatcgattcatcgaaaggtgggaat |
225 |
Q |
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| T |
24895363 |
caatcgattcatcgaaaggtgcgaat |
24895338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 195
Target Start/End: Original strand, 36287105 - 36287253
Alignment:
| Q |
45 |
ttgttcttgtatttgtcttgtttcataatcactataaataatgttgat-tgaattcagatttcactacaattaaactcttggtaagtcaagaatgaaaac |
143 |
Q |
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| T |
36287105 |
ttgttcttatatttatcttgtctcatggtcactataaatatcttatatgtgaattcatatttgactacaattgaactctttga---tcaagaatgaaaat |
36287201 |
T |
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| Q |
144 |
taaacctttaatcttcgtgttctgtgtttgctcactaattatcatcactgtt |
195 |
Q |
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| T |
36287202 |
caaaccttttatcttcgtgttttttctttgttcactaattatcatctctgtt |
36287253 |
T |
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