View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_3 (Length: 588)
Name: NF8490_low_3
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 14 - 572
Target Start/End: Complemental strand, 24011773 - 24011221
Alignment:
| Q |
14 |
acatcaaaatattgtatttttccctttatcatactaattaaagaggacgagatcacatnnnnnnncttaccaatcatcataattcattcttattttatca |
113 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
24011773 |
acatcaaaatattgtatttttcccgttatcatactaattaaagaggacgaggtcacataaaaaa-cttaccaatcatcataattcattcttattttatca |
24011675 |
T |
|
| Q |
114 |
attttctattatttcataacacttcacgatagaaaatgggtaatcacaaaaaaggaataatatagtttaatttcatgtgaccataggagagctatatctt |
213 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24011674 |
attttctattatttcataacacttcaggatagaaaatgggtaatcacaaaaaaggaataatatagtttaatttcatgtgaccataggagagctatatctt |
24011575 |
T |
|
| Q |
214 |
gtgtatatgttggatttccaattcatcaataattcatagagcttgaaaagctcattattggcaataatgtatttttggattgatcgaaagaaatctagtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24011574 |
gtgtatatgttggatttccaattcatcaataattcatagagcttgaaaagctcattattggcaataatgtatttttggattgatcgaaagaaatctagtt |
24011475 |
T |
|
| Q |
314 |
ttttccctttcagtaattagttgatttttcaaatcctaacctccaaagagctctctcattgaataatctaaactcttcataccaccttctattctttatc |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24011474 |
ttttccctttcagtaattagttgatttttcaaatccta--gtccaaagagctctctcattgaataatctaaactcttcatactaccttctattctttatc |
24011377 |
T |
|
| Q |
414 |
gatctcatcatctcaagacttaaagaagccatttatgtttggtcgtttagaaggaatgaatcgtatgtagagggagtgtgaatagataccccacattttt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24011376 |
gatctcatcatctcaagacttaaagaagccatttatgtttg---gtttagaaggaatgaatcgtatgtagagggagtgtgaatagataccccacattttt |
24011280 |
T |
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| Q |
514 |
cgttatgtaaaaacaagtttttcaaaaattgttttgcaagattgtgtgtggcatgatat |
572 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24011279 |
cgttatgtaaaaacaagtttttcaaaaattgttttgcaagattatgtgtggcatgatat |
24011221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 20042116 - 20042064
Alignment:
| Q |
81 |
taccaatcatcataattcattcttattttatcaattttctattatttcataac |
133 |
Q |
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|||||||||||| ||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
20042116 |
taccaatcatcagaattcattcttattttaccaatcttctattatttgataac |
20042064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 278
Target Start/End: Complemental strand, 20041993 - 20041909
Alignment:
| Q |
196 |
ataggagagctatatcttgtgtatatgttggatttccaattcatcaataattcatagag--cttgaaaagctcattattggcaat |
278 |
Q |
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||||||||| ||| |||||| |||||||| ||||| |||||||| ||||||| | ||| | ||||||| |||||||||||||| |
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| T |
20041993 |
ataggagagatatgtcttgtatatatgttacatttcaaattcatcgataattcctcgagaacatgaaaagttcattattggcaat |
20041909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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