View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_4 (Length: 541)
Name: NF8490_low_4
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 28789696 - 28789187
Alignment:
| Q |
19 |
cgaagaaggtttcgacgtggtttaacccgcaagcctatggcactgatcaagaagctacgtaaggcgaaacgtgaggcaccacctggtgagaagccagaac |
118 |
Q |
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| T |
28789696 |
cgaagaaggtttcgacgtggtttaacccgcaagcctatggcactgatcaagaagctacgtaaggcgaaacgtgaggcaccacctggtgagaagccagaac |
28789597 |
T |
|
| Q |
119 |
cagtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaagaccttcaatcaagttgaaattaa |
218 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28789596 |
cagtgaggaatcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaagaccttcaatcaagttgaaattaa |
28789497 |
T |
|
| Q |
219 |
acctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacggtaggcctggtatcggtgctactaactcctccaggttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28789496 |
acctgaaatgattggccactatcttgctgaattctcgatctcttacaagccggttaagcacggtaggcctggtatcggtgctactaactcctccaggttt |
28789397 |
T |
|
| Q |
319 |
attcctctcaagtgaagactctcatcaatgccctccttctatatttcaatgcaaatttttgcttgttttacttgaactatttaattaattcatttctatt |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28789396 |
attcctctcaagtgaagactctcatcaatgccctccttctacatttcaatgcaaatttttgcttgttttacttgaactatttaattaattcatttctatt |
28789297 |
T |
|
| Q |
419 |
tgttaccgttatcaaatttagggatatcagtgtactaaaactttgggtttaaattgtctattgatggtttttggagtttttgtttgattaaatttatatg |
518 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28789296 |
tgttactgttatcaaatttagggatatcagtgaactaaaactttgggtttaaattgtctattgatgctttttggagtttttgtttgattaaatttatatg |
28789197 |
T |
|
| Q |
519 |
cttgtccgtc |
528 |
Q |
| |
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||| |||||| |
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| T |
28789196 |
cttctccgtc |
28789187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 97 - 503
Target Start/End: Original strand, 31247795 - 31248198
Alignment:
| Q |
97 |
ccacctggtgagaagccagaaccagtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatggaaaga |
196 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
31247795 |
ccacctggtgagaagccagaacctgtgaggactcacctccgtaacatgatcattgtacctgagatgatcggtagcatcattggtgtctacaatggaaaga |
31247894 |
T |
|
| Q |
197 |
ccttcaatcaagttgaaattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacggtaggcctggtatcgg |
296 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||| |||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||| || |
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| T |
31247895 |
ccttcaaccaagttgaaattaagcctgaaatgattggtcactatttggctgaattctcaatctcttacaagcctgttaagcatggtaggcctggtattgg |
31247994 |
T |
|
| Q |
297 |
tgctactaactcctccaggtttattcctctcaagtgaagactctcatcaatgccctccttctatatttcaatgcaaatttttgcttgttttacttgaact |
396 |
Q |
| |
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||| ||| |||||||||||||||||||||||||||||||| ||||| |||| || ||||| ||| |||||||| |||||||||||||||| ||||| |
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| T |
31247995 |
tgccactcactcctccaggtttattcctctcaagtgaagatcgtcatcgatgc---ccctctatcttttaatgcaaacttttgcttgttttactggaact |
31248091 |
T |
|
| Q |
397 |
atttaattaattcatttctatttgttaccgttatcaaatttagggatatcagtgtactaaaactttgggtttaaattgtctattgat--ggtttttggag |
494 |
Q |
| |
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|||||| | | |||||||||||| || ||||| | | | ||||||||||| |||||| ||||||||||||||||||||| || | ||||||||| |
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| T |
31248092 |
atttaaatgctccatttctatttgatattgttatgacaat--aggatatcagtgaactaaagttttgggtttaaattgtctatttatgagctttttggag |
31248189 |
T |
|
| Q |
495 |
tttttgttt |
503 |
Q |
| |
|
||||||||| |
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|
| T |
31248190 |
tttttgttt |
31248198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 31246969 - 31247028
Alignment:
| Q |
25 |
aggtttcgacgtggtttaacccgcaagcctatggcactgatcaagaagctacgtaaggcg |
84 |
Q |
| |
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||||||| ||||||||| |||||||| ||||||||||| ||||||||||| || |||||| |
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| T |
31246969 |
aggtttcaacgtggtttgacccgcaaacctatggcactcatcaagaagctccgcaaggcg |
31247028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 91 - 334
Target Start/End: Complemental strand, 44326045 - 44325802
Alignment:
| Q |
91 |
gaggcaccacctggtgagaagccagaaccagtgaagactcacctccgtaacatgatcattgtgcctgagatgattggtagcattattggtgtctacaatg |
190 |
Q |
| |
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||||||||||||||||||||||||||||| || | ||| || || ||||||||||||||||| |||||||||||||| ||||||||||| || ||||||| |
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| T |
44326045 |
gaggcaccacctggtgagaagccagaacctgttaggacccatcttcgtaacatgatcattgtacctgagatgattgggagcattattggagtgtacaatg |
44325946 |
T |
|
| Q |
191 |
gaaagaccttcaatcaagttgaaattaaacctgaaatgattggccactatcttgctgaattctcgatctcttacaagcctgttaagcacggtaggcctgg |
290 |
Q |
| |
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| |||||||| || || |||||||| |||||||| ||||| || || || |||||||||||||| || || ||||||||||||||||||||||| ||||| |
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| T |
44325945 |
ggaagacctttaaccaggttgaaatcaaacctgagatgatcggtcattaccttgctgaattctcaatttcatacaagcctgttaagcacggtagacctgg |
44325846 |
T |
|
| Q |
291 |
tatcggtgctactaactcctccaggtttattcctctcaagtgaa |
334 |
Q |
| |
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||| ||||||||| ||||||||||||| |||||||||||||||| |
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| T |
44325845 |
tattggtgctactcactcctccaggttcattcctctcaagtgaa |
44325802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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