View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_6 (Length: 509)
Name: NF8490_low_6
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 51 - 494
Target Start/End: Original strand, 2066776 - 2067219
Alignment:
| Q |
51 |
cttgattatcaaatatatataattgttattatagatgtgcaaaaaactagtcgttagtttcnnnnnnnggggtgttaattctctagttcttaaaggaaat |
150 |
Q |
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| T |
2066776 |
cttgattatcaaatgtatataattgttattatagatgtgcaaaaaactaatcgttagtttctttttttggggtgttaattctctagttcttaaagaaaat |
2066875 |
T |
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| Q |
151 |
ggactccgataatccaaagtttcagccaaaaatcaaactcattattcattagttatttaaatacatcctctagtaaaataaaatattataacaaacaagt |
250 |
Q |
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|||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2066876 |
ggaccccgataatccaaagtttcagccaaaaattgaactcgttattcattagttatttaaatacatcctctagtaaaataaaatattataacagacaagt |
2066975 |
T |
|
| Q |
251 |
tgaagatcacatcaatattaaaaagtttacatcaaatcaaaactacaatagaattataacaaagttaatacaacctccacagataaatttttgaatatca |
350 |
Q |
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| T |
2066976 |
tgaagatcacatcaatattaaaaagtttacatcaaatcaaaactacaatggaattaaaacaaagttaatacaacctccacatataaatttttgaatatca |
2067075 |
T |
|
| Q |
351 |
tccnnnnnnnnnnnnnngctgcaaaatcactaataatttgttcatataatttgagaaaattaactgttttggatacgcatatgtgggataatctatcaaa |
450 |
Q |
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| T |
2067076 |
tcctttttttcatttttgctgcaaaatcactaataatttgttcatataatttgagaaaattaactgttttggatacgcatatgtgggataatctatcaaa |
2067175 |
T |
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| Q |
451 |
tttttgtaagtctcttatgtaagtataagtctagccttttttat |
494 |
Q |
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| T |
2067176 |
tttttgtaagtctcttatgtaagtataagtctagccttttttat |
2067219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 269 - 313
Target Start/End: Original strand, 48374151 - 48374195
Alignment:
| Q |
269 |
taaaaagtttacatcaaatcaaaactacaatagaattataacaaa |
313 |
Q |
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| T |
48374151 |
taaaaagttcatatcaaatcaaaactacaatagaatcataacaaa |
48374195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 247 - 313
Target Start/End: Original strand, 34968726 - 34968792
Alignment:
| Q |
247 |
aagttgaagatcacatcaatattaaaaagtttacatcaaatcaaaactacaatagaattataacaaa |
313 |
Q |
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| T |
34968726 |
aagttaaagattacatcaatattaaaaagttcacatcatattaaaacaatgatagagttataacaaa |
34968792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 37333548 - 37333484
Alignment:
| Q |
248 |
agttgaagatcacatcaatattaaaaagtttacatcaaatcaaaactacaatagaattataacaaa |
313 |
Q |
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| T |
37333548 |
agttaaagattacatcaatattaaaaagtttatat-atattaaaactacgatagaataataacaaa |
37333484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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