View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_7 (Length: 493)
Name: NF8490_low_7
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 152 - 471
Target Start/End: Original strand, 7558479 - 7558798
Alignment:
| Q |
152 |
ccttacattggctcttttattagcattatctcaactatatttaagaactctctccatgatgctgggaactcaattcaagagcttctatcctccttcatgt |
251 |
Q |
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| T |
7558479 |
ccttacattggttcttttattggcattatctcaactatacttaagagctccctccatgatgttgggaactcaattcaagagcctctatcctccttcatgt |
7558578 |
T |
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| Q |
252 |
taggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnnntcgatgtgtaatgttaggttagctatctaattatgataaaacattta |
351 |
Q |
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| T |
7558579 |
taggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaattgatgtgtaatgttaggtcagctatctaattataataaaacattta |
7558678 |
T |
|
| Q |
352 |
caggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaa |
451 |
Q |
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| T |
7558679 |
caggaaactaatataacaaattacaaccaaatattctattctatcatgatgtgtactagttttgtgaaaataagatctcttaaatcacctttagattgaa |
7558778 |
T |
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| Q |
452 |
atatatatgcattccatgaa |
471 |
Q |
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| T |
7558779 |
atatatatgcattccatgaa |
7558798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 7558264 - 7558395
Alignment:
| Q |
19 |
ggatgagcattgagcaatcattttttactcttgcctctaatatcacccagactcgtatttcctttccttcaaatataacagttcctaagtctcatttaaa |
118 |
Q |
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| T |
7558264 |
ggatgagcattaagcaatcattttttactcttgcctctaatatcacccagactagtatttcctttccttcaaatataacagtttctaagcctcatttaaa |
7558363 |
T |
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| Q |
119 |
tcattgtactaaattcaatatctcttttatat |
150 |
Q |
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| T |
7558364 |
tcattgtactaaattcaatatctcttttatat |
7558395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 398 - 471
Target Start/End: Original strand, 7593812 - 7593885
Alignment:
| Q |
398 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
471 |
Q |
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| T |
7593812 |
tgatgtgtactagtttagtgaaaataagatctcttagatcacctttagattgcaatagatatgcattccatgaa |
7593885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 151 - 471
Target Start/End: Complemental strand, 8993501 - 8993162
Alignment:
| Q |
151 |
cccttacattggctcttttattagcattatctcaactatatttaagaactctctccatgatgctgggaactcaattcaagagcttctatcctccttcatg |
250 |
Q |
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| T |
8993501 |
cccttacattggctcttttatttgcattatctcaactatatttaagaactctctccatgatgctgggaactcaattcaagagcttctatcctccttcatg |
8993402 |
T |
|
| Q |
251 |
ttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnnntcgatgtgtaatgttaggttagctatctaattatgat--------- |
341 |
Q |
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| T |
8993401 |
ttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaatcaatgtgtaatgttaggtcagctatctaattatgataaaacattc |
8993302 |
T |
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| Q |
342 |
----------aaaacatttacaggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgtgaaaataagatctct |
431 |
Q |
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| T |
8993301 |
cttcaaaaaaaaaacatttacaggaaactaatataacaaattacgaccaaatattctattctatcatgatgtgtactagttttgtgaaaataagatctct |
8993202 |
T |
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| Q |
432 |
taaatcacctttagattgaaatatatatgcattccatgaa |
471 |
Q |
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| T |
8993201 |
taaatcacctttagattgaaatatacatgcattccatgaa |
8993162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 144
Target Start/End: Complemental strand, 8993711 - 8993588
Alignment:
| Q |
21 |
atgagcattgagcaatcattttttactcttgcctctaatatcacccagactcgtatttcctttccttcaaatataacagttcctaagtctcatttaaatc |
120 |
Q |
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| T |
8993711 |
atgagcattgagcaatcatttttcactcttgcctctaatatcacccagactactatttcctttccttcaaatataacagttcctaagtctcatttaaatc |
8993612 |
T |
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| Q |
121 |
attgtactaaattcaatatctctt |
144 |
Q |
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| T |
8993611 |
attgtactaaattcaatatctctt |
8993588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 398 - 471
Target Start/End: Complemental strand, 8968255 - 8968182
Alignment:
| Q |
398 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
471 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
8968255 |
tgatgtgtactagtttagtgaaaataagatctcttaaatcacctttagattgcaatagatatgcattccatgaa |
8968182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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