View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8490_low_9 (Length: 439)
Name: NF8490_low_9
Description: NF8490
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8490_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 12 - 423
Target Start/End: Original strand, 32126362 - 32126773
Alignment:
| Q |
12 |
tggtgtggcgagtgttgcagaataaaatagcaacaaaggtgtatggagtgcagtggtgaagaatcagcatctcatttcaatcagtttgaactttgaatgt |
111 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32126362 |
tggtgtggagagtgttgcagaataaaatagcaacaaaggtttatggagtgtagtggtgaagaatcagtatctcatttcaatcagtttgaactttgaatgt |
32126461 |
T |
|
| Q |
112 |
ctggttgccagcggtcgaacatttgtgaagagagttagcatggtttggtatgtgcatgtgtggacaatttgtaaaacaagaaatggaaaattcttctaaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126462 |
ctggttgccagcggtcgaacatttgtgaagagagttagcatggtttggtatgtgtatgtgtggacaatttgtaaaacaagaaatggaaaattcttctaaa |
32126561 |
T |
|
| Q |
212 |
ataaggaaattgacacagaacaagatggttgagcataaaatcaaagagagcctgtctggatagtgtctttgtttcaccgttcactgctatcaaagtgaag |
311 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32126562 |
ataaggaaattgacatagaacaagatggttgagcataaaatcaaagagagcctgtctggatagtgtctttgtttcaccgttcactgctatcaaagtgaag |
32126661 |
T |
|
| Q |
312 |
gtcgcaggagtggtgtggggctatgttgtctcagtttcagagttcagggcttggcaaggttgggggcagtgtttgtggtttcagcttagctgaggcggtc |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32126662 |
gtcgcaggagtggtgtggggctatgttgtctcagtttcagagttcagggcttggcaaggttgggggcagtgtgtgtggtttcagcttagctgaggcggtc |
32126761 |
T |
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| Q |
412 |
gtgtctgatagg |
423 |
Q |
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|||||||||||| |
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| T |
32126762 |
gtgtctgatagg |
32126773 |
T |
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