View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_high_1 (Length: 915)
Name: NF8491_high_1
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 733; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 733; E-Value: 0
Query Start/End: Original strand, 19 - 909
Target Start/End: Original strand, 19358745 - 19359633
Alignment:
| Q |
19 |
gggtctagcggaaagggataacttcccacaacatttggcgaaccaaggttccaatctcggctaggaaaagtacaagtaccctcattaagattacctctag |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19358745 |
gggtctagcggaaagggataacttcccacaacgtttggcgaaccaaggttccaatctcggctaggaaaagtacaagtaccctcagtaagattacctctag |
19358844 |
T |
|
| Q |
119 |
tggagggaacctatgggaaacaaaaagagttatcctattattacgttttataagcacggaaatgcttttgcaaataattgtatatatgatctgcatattt |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19358845 |
tggagggaacctatgggaaataaaaagagttatcctattattacgttttataagcacggaaatgcttttgcaaataattgtatatatgatctgcatattt |
19358944 |
T |
|
| Q |
219 |
tactttcagctttggtttttgagtaccctagcttcatattatgtgcctaatccctacctctgtaaaaagggctgcatttctgtaaggactcttgacaaat |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
19358945 |
tactttcagctttggtttttgagtaccctagcttcatattatgtgcctaatccctacctatgtaaaaagggctgcatttctgtatggactct-gacaaat |
19359043 |
T |
|
| Q |
319 |
tagttactcgtgtggtttatatatgcagctctgttcttttgtgtgatttatatgaaccatgggttttcctgatcatagttcttacatgatacacgtgacg |
418 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19359044 |
tagttactcgtgtggtttata--tgcagctctgttcttttgtgtgatttatatgaaccatggtttttcctgatcatagttcttacatgatacacgtgaca |
19359141 |
T |
|
| Q |
419 |
cctccgaaggcccaaaaataccataagccaatactgcgagacacctttcattttgcttgtaggattgacactgaaacttctgtgaatataattgcaagtt |
518 |
Q |
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| T |
19359142 |
cctccgaaggcccaaaaataccataagccaatagcgcgagacacctttcattttgcttgtaggattgacactgaaacttctgtgaatataattgcaagtt |
19359241 |
T |
|
| Q |
519 |
ttcttcagtttgtatattaactttcctaactcttgaatatttttctcatcatccaaaatgacattgttggtaagcacgttgttttatttgtagataatct |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19359242 |
ttcttcagtttgtatattaactttcctaactcttgaatatttttctcatcatccaaaatgacattgttggtaagcacgttgttttatttgtagataatct |
19359341 |
T |
|
| Q |
619 |
acacaactcagcatttaactttgcaaaatttgaaacttttgtttgctgttatgatta-nnnnnnnnctgattcagtttctgtctatgttacatgaaaata |
717 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
19359342 |
acacaactcagcatttaactttgcaaaatttgaaacttttgtttgctgttatgattatttttttttctgattcagtttctgtctatgttacatgaaaata |
19359441 |
T |
|
| Q |
718 |
ctatgatctggtcaccttaaagaactaatgtaannnnnnnnnnnnnnnnnnnnatcattaagtttcattgttggtacgagtagaataacttcgtagacat |
817 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
19359442 |
ctatgatccggtcaccttaaagaactaatgtaatttttggtttttaactttttatcattaagtttcattgctggtacgagtagaataacttcgtagacat |
19359541 |
T |
|
| Q |
818 |
aaaagctgaagcagttcatttatttaagatgattaaaaactctgactaattcctaatttgattactatgatctatcactcaagtataatcta |
909 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19359542 |
aaaagctgaagcagttcatttatttaagatgattaaaaactctgactaattcctaatttgattactatgatctatcactcaagtatgatcta |
19359633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 14750450 - 14750532
Alignment:
| Q |
121 |
gagggaacctatgggaaacaaaaag--agttatcctattattacgttttataagcacggaaatgcttttgcaaataattgtat |
201 |
Q |
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|||||||||| ||||||||||||| ||||||||||||| |||||||| ||||||| ||| |||||||||||||||||||| |
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| T |
14750450 |
gagggaacctgtgggaaacaaaaaagaagttatcctattaatacgtttttcaagcacgaaaacgcttttgcaaataattgtat |
14750532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 18912600 - 18912535
Alignment:
| Q |
140 |
aaaaagagttatcctattattacgttttataagcacggaaatgcttttgcaaataattgtatatat |
205 |
Q |
| |
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|||| |||||||||||||| | ||||| |||||| | ||| |||||||||||||||||||||||| |
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| T |
18912600 |
aaaacgagttatcctattaccatgttttgtaagcatgaaaaagcttttgcaaataattgtatatat |
18912535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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