View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8491_high_14 (Length: 303)
Name: NF8491_high_14
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_high_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 21377027 - 21376745
Alignment:
| Q |
1 |
ggaaccggattgttacaagtcagccaaaaaagaaatttatatttttcgggaagacaaaacttccaaatccaaatcgaagagtgaaggtgttggtttgatc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21377027 |
ggaaccggattgttacaagtcagccaaaaaagaaatttatatttttcgggaagacaaaacttccaaatccaaatcaaagagtgaaggtgttggtttgatc |
21376928 |
T |
|
| Q |
101 |
aactctatcggaattattgagaagccagatgtaaccgctttttggagtatgaataccattcttttggttgttccatagaactggatcttcctcggtatca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21376927 |
aactctgtcggaattattgagaagccagatgtaaccgctttttggagtatgaataccattcttttggttgttccatagaactggatcttcctcggtatca |
21376828 |
T |
|
| Q |
201 |
ttgaaattcatgtgagtgaggtttatgtgatcataaattgtattagatggcagaatattcgtgtggggatcattagaagtgag |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21376827 |
ttgaaattcatgtgagtgaggtttatgtgatcataaattgtattagatagcagaatattcgtgtggggatcattagaagtgag |
21376745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 25121974 - 25122032
Alignment:
| Q |
117 |
ttgagaagccagatgtaaccgctttttggagtatgaataccattcttttggttgttcca |
175 |
Q |
| |
|
|||||||||||| ||||||| |||||| ||| || | | |||||||||||||||||||| |
|
|
| T |
25121974 |
ttgagaagccagttgtaaccacttttttgagaataagtgccattcttttggttgttcca |
25122032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University