View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_high_5 (Length: 538)
Name: NF8491_high_5
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 49 - 529
Target Start/End: Original strand, 25315094 - 25315595
Alignment:
| Q |
49 |
gatcttcttatcttaaattttttatttaaaatatgaacttaacaaaatagtacactcattgaattctttatctgaaaattttgcagaaatggaaccaaga |
148 |
Q |
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| T |
25315094 |
gatcttcttatcttaaattttttatttaaaatatgaacttaacaaaatagtacactcattgaattctttatctgaaaattttgcagaaatggaaccaaga |
25315193 |
T |
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| Q |
149 |
aagcctcagggttttggttagaaacatctagcttaaaactattattagnnnnnnnnnncttcctttagtcttaaattttctgaagctattttcattggat |
248 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25315194 |
aagcctcagggttttggttagaaacatctagcctaaaactattataagttttttttt-cttcctttagtcttaaattttctgaagctattttcattggat |
25315292 |
T |
|
| Q |
249 |
tgatgtacctattttcttgtgcaggggctcgttgagtggcatgnnnnnnngagcatactaaaagtgtcaaagtctttgcttttttacaatataattgaag |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25315293 |
tgatgtacctattttcttgtgcaggggctcgttgagtggcatgtttttttgagcatactagaagtgtcaaagtctttgcttttttacaatataattgaag |
25315392 |
T |
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| Q |
349 |
aattacgacaa----------------------atcagagcttgtagtgcaacttggggtggaacatcttgaagattcaaagaattttcaaatcataaat |
426 |
Q |
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| T |
25315393 |
aattacgacaatttgccaagtgattatggtaaaatcagagcttgtagtgcaacttggggtggaacatcttgaagattcaaagaattttcaaatcataaat |
25315492 |
T |
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| Q |
427 |
gatcttgagaatttcagaagagggtggaagaaatttgtttataagcaactgtatttattaatattatgggcctcgcatgataatagctatattgaattct |
526 |
Q |
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| T |
25315493 |
gatcttgagaatttcagaagagggtggaagaaatttgtttataagccactgtattaattaatattatgggcctcgcatgataatagctatattgaattct |
25315592 |
T |
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| Q |
527 |
ctg |
529 |
Q |
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| T |
25315593 |
ctg |
25315595 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 26705475 - 26705556
Alignment:
| Q |
90 |
acaaaatagtacactcattgaattctttatctgaaaattttgcagaaatggaaccaagaaagcctcagggttttggttagaa |
171 |
Q |
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||||||||| |||||||||||||| |||||||||| |||||||||| || ||||| |||||||| ||| | ||||||||| |
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| T |
26705475 |
acaaaatagcacactcattgaatttattatctgaaacttttgcagaattgaaaccacgaaagccttaggatcctggttagaa |
26705556 |
T |
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