View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_high_6 (Length: 508)
Name: NF8491_high_6
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 172 - 493
Target Start/End: Original strand, 35704566 - 35704886
Alignment:
| Q |
172 |
gacatcataactatttctgtggcagcacggtgattttaaactcttacaggcaacttcaaatgagtgatcaaactagttcatcgtgatcaactttcgacac |
271 |
Q |
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| T |
35704566 |
gacatcataactatttctgtggcagcgcggtgattt-aaactcttacaggaaacttcaaatgagtgatcaaactagttcatcgtgatcaactttcgacac |
35704664 |
T |
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| Q |
272 |
taaacatcttttcatcaaatcaacactttctttttaacaagttaatctttctatcaaattaatcccaacaaagtcttttatttaaaatcaaccaacaaat |
371 |
Q |
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| T |
35704665 |
taaacatcttttcatcaaatcaacactttctttttaacaagttaatctttctatcaaattaatcccaacaaagtcttttatttaaaatcaaccaacaaat |
35704764 |
T |
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| Q |
372 |
aattatttcctaccaaagaactatatactttgatttctctatgcaccgagatataaatagatacaacataccactcatgtcgagcacaataataaaatta |
471 |
Q |
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| T |
35704765 |
aattatttcctaccaaagaactatatactttgatttctctatgcaccgagatataaatagatacaacataccactcatgtcgagcacaataataaaattt |
35704864 |
T |
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| Q |
472 |
catttttctcactatttgaatt |
493 |
Q |
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| T |
35704865 |
catttttctcgctatttgaatt |
35704886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 51385639 - 51385720
Alignment:
| Q |
1 |
caattaggccagatgattttacccattcttcaccacacctatagttgatacacaaaaaacaaacaaatcaagagttggaacc |
82 |
Q |
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| T |
51385639 |
caatttggccagatgaatttaaccattcttctccacacctatatatgaacaacaaaaaacaaacaaatcaatagttggaacc |
51385720 |
T |
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