View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_high_9 (Length: 413)
Name: NF8491_high_9
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 161 - 398
Target Start/End: Original strand, 11287071 - 11287309
Alignment:
| Q |
161 |
gcattaatgtattgtttcccatcaacatgaaccaatatttataacatttacatttatctataaataaatgttactaaattttaaaagggttgaacaaaaa |
260 |
Q |
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| T |
11287071 |
gcattaatgtattgtttcccatcaacatgaaccaatatttataacatttacatttatctataaataaatgttactaaattttaaaagggttgaacaaaaa |
11287170 |
T |
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| Q |
261 |
agactaaaacaaacaacaacacacaccattattctctacaaagttca-nnnnnnnnaatctagaattattacgaattattgaaagaatgaataaaaaagg |
359 |
Q |
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| T |
11287171 |
agactaaaacaaacaaaaacacacaccattattctctacaaagttcatttttttttaatctagaattattactaattattgaaagaatgaacaaaaaagg |
11287270 |
T |
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| Q |
360 |
actaaaccaatcaaaaacaaaacaccccacaagttattt |
398 |
Q |
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| T |
11287271 |
actaaaccaatcaaaaacaaaacaccccacaagttattt |
11287309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 11286919 - 11287010
Alignment:
| Q |
9 |
atcaccaataaatgcagaaaactacatttaaaaatatagatcatattatacaagaaattaaaatgcaaaaggggtttatgactttactagag |
100 |
Q |
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| T |
11286919 |
atcaccaataaatgcagaaaactacatttaaaaatatagatcatgttatacaagaaattaaaatgcaaaaggggtttatgactttactagag |
11287010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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