View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_10 (Length: 518)
Name: NF8491_low_10
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 38 - 513
Target Start/End: Original strand, 1492149 - 1492624
Alignment:
| Q |
38 |
caagttaagggtgatatcctctctttcaaacatcacttggtttggtactttcacattgtctccttttgattcaattatattctttatccaaattaaacgg |
137 |
Q |
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| T |
1492149 |
caagttaagggtgatatcctctcttgcaaacatcacttggtttggtactttcacattgtctccttttgattcaattatattctttatccaaattaaacgg |
1492248 |
T |
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| Q |
138 |
caattccaatattattctcttaaattaagctaaactacacatgacaaaatgtgattatgcagctatcagttgactaagaaaaatagactttcatgctaaa |
237 |
Q |
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| T |
1492249 |
caattccaatattattctgttaaattaagctaaacttcacatgacaaaatgtaattatgcagctatcagttgactaagaaaaatagactttcatgctaaa |
1492348 |
T |
|
| Q |
238 |
ttacaaaagctactttttgtttctgaatttttgctgattagtgtatggttttttgcaggttattaaaatgagtcaagtttttagtgatgatgctgtgtca |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492349 |
ttacaaaagctactttttgtttctgaatttttgctgattagtgtatggttttttgcaggttattaaaatgagtcaagtttttagtgatgatgctgtgtca |
1492448 |
T |
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| Q |
338 |
agggccatggaagaaataaagagcaatccttcatcacgtagacacggtggtgctattcttccagatatgcacaaagtttcaagtcctcctaagcagacac |
437 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
1492449 |
agggccatggaagaaataaagagcaatccttcatcacgtggacacggtggtgctattcttccacatatgcacaaagtttcaggtcctcctaagcagacac |
1492548 |
T |
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| Q |
438 |
ttttccaagatttcaaacacaatttcaatgaaactttcttctcagatgacccttttgccaagtttaaacaccaaac |
513 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1492549 |
ttttccaagatttcaaacacagtttcaatgaaactttcttctcagatgacccttttgccaagtttaaagaccaaac |
1492624 |
T |
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