View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_11 (Length: 513)
Name: NF8491_low_11
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 19 - 502
Target Start/End: Complemental strand, 33736362 - 33735879
Alignment:
| Q |
19 |
tttattttatgcacttcttagtatagtagcttgaaaaccctaaaacactgtactcaacactcttaggagtagagttaaggaactcatagatgaagaacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33736362 |
tttattttatgcacttcttagtatagtagcttgaaaaccctaaaacactgtactcaacactcttaggagtagagttaaggaactcatagatgaagaacaa |
33736263 |
T |
|
| Q |
119 |
agttcaatgtacttatatacaaacaaaaattaactagctaatatctcaacaaatttaacaaacttctaactaccttgtgtgacaaacaagttatcaaaac |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33736262 |
agttcaatgtacttatatacaaacaaaaattaactagctaaaatctcaacaactttaacaaacttctaactaccttgtgtgacaaacaagttatcaaaac |
33736163 |
T |
|
| Q |
219 |
taaaccatgaattatcacttcataggtgataaggcagctagtggaagaaagattatgcacattagtgaataactaattaaacacactagctnnnnnnnnc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
33736162 |
taaaccatgaattatcacttcataggtgataaggcagctagtggaagaaagattatgcacattaatgaataactaattaaacacactagctaaaaaaaac |
33736063 |
T |
|
| Q |
319 |
tcttcacttgttattgaattcaagaactaaaagtgttccgtgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatc |
418 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33736062 |
tcttgacttgttattgaattcaagaactaaaagtgttccatgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatc |
33735963 |
T |
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| Q |
419 |
agcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
502 |
Q |
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| T |
33735962 |
agcttctccgatactatcccaaaaatcacaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
33735879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 346 - 502
Target Start/End: Complemental strand, 33750847 - 33750691
Alignment:
| Q |
346 |
taaaagtgttccgtgttcttgagtcagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatc |
445 |
Q |
| |
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|||||||||||| ||||| || ||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| || | |||||||||||||| |
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| T |
33750847 |
taaaagtgttcccagttctggaatcagaagaatctccaccaaaatccataaacctcatcagttgttgaaaatcagtttccccaagcctatcccaaaaatc |
33750748 |
T |
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| Q |
446 |
acaattcttattactctcaaatcccatagttgtctcaatttgtatttcttgattcat |
502 |
Q |
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||||| | ||||| || ||||||| ||| |||||||| |||| |||||||||||||| |
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| T |
33750747 |
acaatccatattattcccaaatccaatatttgtctcactttgcatttcttgattcat |
33750691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 388 - 495
Target Start/End: Complemental strand, 33721327 - 33721214
Alignment:
| Q |
388 |
aatccataaacctcattagttgttgaaaatcagcttct---ccgatactatcccaaaaatcaca---attcttattactctcaaatcccatagttgtctc |
481 |
Q |
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|||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||| | || ||||| || |||||||||| |||||||| |
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| T |
33721327 |
aatccataaacctcataagttgttgaaaatcagcttcttccccaatactatcccaaaaatcacattcagtcgtattattcccaaatcccatcgttgtctc |
33721228 |
T |
|
| Q |
482 |
aatttgtatttctt |
495 |
Q |
| |
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|||||| ||||||| |
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| T |
33721227 |
aatttgcatttctt |
33721214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 370 - 502
Target Start/End: Complemental strand, 33719341 - 33719209
Alignment:
| Q |
370 |
cagaagaatctctatcaaaatccataaacctcattagttgttgaaaatcagcttctccgatactatcccaaaaatcacaattcttattactctcaaatcc |
469 |
Q |
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|||||||||||| | ||| ||||||||| |||| | |||||||||||||| ||| || || |||||| |||||||||||| ||||||| ||||||| || |
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| T |
33719341 |
cagaagaatctccagaaaattccataaacttcataaattgttgaaaatcaggttcaccaatgctatccaaaaaatcacaatccttattattctcaaaccc |
33719242 |
T |
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| Q |
470 |
catagttgtctcaatttgtatttcttgattcat |
502 |
Q |
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| | |||| |||||||| |||||||||||||| |
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| T |
33719241 |
cgtcattgtttcaatttgcatttcttgattcat |
33719209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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