View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8491_low_14 (Length: 464)
Name: NF8491_low_14
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_14 |
 | |
|
| [»] scaffold1215 (1 HSPs) |
| | |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 19 - 404
Target Start/End: Complemental strand, 34473926 - 34473541
Alignment:
| Q |
19 |
ccaagctcatgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473926 |
ccaagctcatgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgct |
34473827 |
T |
|
| Q |
119 |
atttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473826 |
atttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaa |
34473727 |
T |
|
| Q |
219 |
atattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34473726 |
atattgcttcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgat |
34473627 |
T |
|
| Q |
319 |
ctacaggatatcccaacttattcaattcagccacttctctgatgttttcattccaaacacttcccttctctcaactacggtggttg |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34473626 |
ctacaggatatcccaacttattcaattcagccacttctctgatgttttcattccaaacacttcccttctctcaactacggtggttg |
34473541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 29 - 330
Target Start/End: Original strand, 34372671 - 34372972
Alignment:
| Q |
29 |
gagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatg |
128 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | |||||||||||| ||||||||| ||| |||| |||||||||||||||||||| || |||| |
|
|
| T |
34372671 |
gagtttttctcagatgaagataccatcagtgatgcctcagacgttactgatgcaaatgatattctcattcgaaaaaggtatgatcctgcttttggataat |
34372770 |
T |
|
| Q |
129 |
ttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttc |
228 |
Q |
| |
|
||||||||||||| | | ||||||||| |||||||||||||||| |||| |||||||||| | |||| |||| |||||||| | ||||||||||||||| |
|
|
| T |
34372771 |
ttataaatatcaattgtactcatgagtgaaaatgtctatctgaaattaagatcattgtaaattattcattgttctctacatttaataaaaatattgcttc |
34372870 |
T |
|
| Q |
229 |
ttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggata |
328 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
34372871 |
ttgtggtatggaaaattatgcacctgatggtgttaccatggatttccaaattattgtactttacagtacatttctcagttatctgcggatctacaggata |
34372970 |
T |
|
| Q |
329 |
tc |
330 |
Q |
| |
|
|| |
|
|
| T |
34372971 |
tc |
34372972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 64 - 330
Target Start/End: Complemental strand, 34467876 - 34467610
Alignment:
| Q |
64 |
ctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgt |
163 |
Q |
| |
|
|||||||| ||||| |||||| |||||||||||||| ||| ||||||||||| | || ||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
34467876 |
ctcagacgataccgttgcaaaaggcatttccattggagaaaagtatgatcctgttcttggatatgttataaatatcaactatgctcatgagggaaaatgc |
34467777 |
T |
|
| Q |
164 |
ctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggtgtta |
263 |
Q |
| |
|
||||||||| |||||||| |||| |||| |||| |||| |||||||| | ||||||||||| |||||||||| |||||||| || |||| ||||||||| |
|
|
| T |
34467776 |
ctatctgaatttaatatcgttgttactcattcattgttctctacatttaataaaaatattgtttcttgtggtatggaaaatcatatacctaatggtgtta |
34467677 |
T |
|
| Q |
264 |
tcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
330 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |||||||||||| ||| ||| |||||||| |||||| |
|
|
| T |
34467676 |
ccatagatttccagattattgtactttatattacatttctcaactatttgtggatctacatgatatc |
34467610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 160 - 330
Target Start/End: Complemental strand, 27625951 - 27625781
Alignment:
| Q |
160 |
atgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggt |
259 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||| |
|
|
| T |
27625951 |
atgtctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggt |
27625852 |
T |
|
| Q |
260 |
gttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
330 |
Q |
| |
|
|||| || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
27625851 |
gttaccatagatttccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc |
27625781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 160 - 330
Target Start/End: Complemental strand, 34511724 - 34511554
Alignment:
| Q |
160 |
atgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttcttgtggtctggaaaattatgcacctgatggt |
259 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| |||| |||| |||||||| | ||||||||||| ||||||| || |||||||||||| |||| ||||| |
|
|
| T |
34511724 |
atgtctatctgaatttaatgtcattgttactcattcattgttctctacatttaataaaaatattgtttcttgtcgtatggaaaattatgtacctaatggt |
34511625 |
T |
|
| Q |
260 |
gttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggatatc |
330 |
Q |
| |
|
| || || |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||| |
|
|
| T |
34511624 |
gctaccatagatttccaaattattgtactttatattacatttctcaattatttgtggatctacatgatatc |
34511554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 27 - 322
Target Start/End: Complemental strand, 34477859 - 34477572
Alignment:
| Q |
27 |
atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgata |
126 |
Q |
| |
|
|||| ||||||| |||||| ||||||||||||| |||||||| | | | || ||| ||||||||| |||| ||||||||||||| | || |||| |
|
|
| T |
34477859 |
atgattttttctcagatgacgataccatcagtaatgcctcagacgctgctgttgaaaaaggcatttccagcggaataaggtatgatccttttcttggata |
34477760 |
T |
|
| Q |
127 |
tgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgct |
226 |
Q |
| |
|
||||||||||||||| ||| || | |||| ||||| |||||||||| |||||| || |||||||| | |||||| | | ||||| ||||||| |
|
|
| T |
34477759 |
tgttataaatatcaactatacttacgagtgaaaatttctatctgaatttaataacagtgtaactcatc--------tctacagttaataaaattattgct |
34477668 |
T |
|
| Q |
227 |
tcttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctac |
322 |
Q |
| |
|
||||||||| | |||||||||| ||| |||||||||| || |||||||||||||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
34477667 |
tcttgtggtattgaaaattatgtaccagatggtgttaccattgatttccaaattattggactttttagtacatttctcaattatctgtggatctac |
34477572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 190
Target Start/End: Original strand, 34376094 - 34376196
Alignment:
| Q |
88 |
catttccattggaaaaaggtatgatcctgctatttgatatgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgta |
187 |
Q |
| |
|
||||||| |||||||||||||||| | || | || ||||| ||||||||||||| ||| ||||||||| ||||| ||||||| || |||||||||||||| |
|
|
| T |
34376094 |
catttcccttggaaaaaggtatgaccatgttcttggatatcttataaatatcaactatactcatgagtgaaaatttctatcttaatttaatatcattgta |
34376193 |
T |
|
| Q |
188 |
act |
190 |
Q |
| |
|
||| |
|
|
| T |
34376194 |
act |
34376196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 27 - 177
Target Start/End: Complemental strand, 34462793 - 34462643
Alignment:
| Q |
27 |
atgagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgata |
126 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||| ||||||||| | | || ||| ||||||||| ||||||||||||||| || | || |||| |
|
|
| T |
34462793 |
atgattttttctcagatgaagataccatcagtaatgcttcagacgttcctgttgaaaaaggcatttccaacggaaaaaggtatgatgttgttcttggata |
34462694 |
T |
|
| Q |
127 |
tgttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaa |
177 |
Q |
| |
|
||||||||||||||| ||| |||| || ||||| |||||||||| |||| |
|
|
| T |
34462693 |
tgttataaatatcaactatactcacgatagaaaatttctatctgaatttaa |
34462643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 27626047 - 27625962
Alignment:
| Q |
30 |
agtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcct |
115 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||| | |||| |||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
27626047 |
agtttttctcagatgaagataccatcagtaatgcctcagatgataccattgcaaaaggcattaccattggaaaaaggtataatcct |
27625962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 30 - 115
Target Start/End: Complemental strand, 34511820 - 34511735
Alignment:
| Q |
30 |
agtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcct |
115 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||| | |||| |||||| ||||| ||||||||||||||||| ||||| |
|
|
| T |
34511820 |
agtttttctcagatgaagataccatcagtaatgcctcagatgataccattgcaaaaggcattcccattggaaaaaggtataatcct |
34511735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1215 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold1215
Description:
Target: scaffold1215; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 29 - 330
Target Start/End: Complemental strand, 642 - 341
Alignment:
| Q |
29 |
gagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatg |
128 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||| |||| |||||||||||||||||||||||||| ||||||| | |
|
|
| T |
642 |
gagtttttctcagatgaagataccttcagtgacgcctcagacattaccgatgcaaatgacattcccattggaaaaaggtatgatcctgctttttgataag |
543 |
T |
|
| Q |
129 |
ttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttc |
228 |
Q |
| |
|
|||||||||||| | | ||||||||| ||||| |||||||||||||||||| |||||||||| | || |||| ||| |||| | ||||||||||||||| |
|
|
| T |
542 |
ctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattgtaactcatccattgttctctgcatttaataaaaatattgcttc |
443 |
T |
|
| Q |
229 |
ttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggata |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| |||| |
|
|
| T |
442 |
ttgtggtctggaaaattatgcacctgatggtgataccatagatttccaaattattgtactttacaatacatttctcagttatctgcagatctacaagata |
343 |
T |
|
| Q |
329 |
tc |
330 |
Q |
| |
|
|| |
|
|
| T |
342 |
tc |
341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 29 - 330
Target Start/End: Complemental strand, 10526648 - 10526347
Alignment:
| Q |
29 |
gagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatg |
128 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||| || ||||||| |||||||||||||| |||| |||||||||||||||||||||||||| ||||||| | |
|
|
| T |
10526648 |
gagtttttctcagatgaagataccttcagtgacgcctcagacattaccgatgcaaatgacattcccattggaaaaaggtatgatcctgctttttgataag |
10526549 |
T |
|
| Q |
129 |
ttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttc |
228 |
Q |
| |
|
|||||||||||| | | ||||||||| ||||| |||||||||||||||||| |||||||||| | || |||| ||| |||| | ||||||||||||||| |
|
|
| T |
10526548 |
ctataaatatcaactgtactcatgagtgaaaatatctatctgaagttaatattattgtaactcatccattgttctctgcatttaataaaaatattgcttc |
10526449 |
T |
|
| Q |
229 |
ttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggata |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| | ||||||||||| ||||||| |||||||| |||| |
|
|
| T |
10526448 |
ttgtggtctggaaaattatgcacctgatggtgataccatagatttccaaattattgtactttacaatacatttctcagttatctgcagatctacaagata |
10526349 |
T |
|
| Q |
329 |
tc |
330 |
Q |
| |
|
|| |
|
|
| T |
10526348 |
tc |
10526347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 29 - 330
Target Start/End: Complemental strand, 10533457 - 10533169
Alignment:
| Q |
29 |
gagtttttcttagatgaaaataccatcagtaacagctcagacgttaccgatgcaaattgcatttccattggaaaaaggtatgatcctgctatttgatatg |
128 |
Q |
| |
|
|||||||||| ||||||| ||||||||||| | ||||||| | | |||||||||| |||| |||||||||||||||||||||||||| || |||| | |
|
|
| T |
10533457 |
gagtttttctcagatgaagataccatcagtgatgcctcagacatcagcgatgcaaatgacattcccattggaaaaaggtatgatcctgcttttggataag |
10533358 |
T |
|
| Q |
129 |
ttataaatatcaaatatgctcatgagttaaaatgtctatctgaagttaatatcattgtaactcgttcactgttatctacattcattaaaaatattgcttc |
228 |
Q |
| |
|
||||||||||||| | | |||| |||| ||||||||||||||||||||||||||||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
10533357 |
ttataaatatcaactgtactcacgagtgaaaatgtctatctgaagttaatatcattgtaac-------------tctgcatttaataaaaatattgcttc |
10533271 |
T |
|
| Q |
229 |
ttgtggtctggaaaattatgcacctgatggtgttatcaaagatttccaaattattgtactttatagtacatttctcaattatctgtcgatctacaggata |
328 |
Q |
| |
|
||||||| |||||||||| ||||||||||| |||| | |||||||||||||||||||||||| |||||||||||| ||||||| |||||||| |||| |
|
|
| T |
10533270 |
ttgtggtatggaaaattaggcacctgatggcgttacgatagatttccaaattattgtactttacagtacatttctcggttatctgcggatctacaagata |
10533171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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