View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_16 (Length: 437)
Name: NF8491_low_16
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 422
Target Start/End: Original strand, 44607155 - 44607559
Alignment:
| Q |
18 |
actcatcgccaataactttggatctttgttcaacgtcacgattaagaatgagcttattggaaccgtgaattttataataagagagaacaccgtcatggag |
117 |
Q |
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| T |
44607155 |
actcatcgccaataactttggatctttgttcaacgtcacgattaagaatgagcttattggaaccatgaattttataataagagagaacaccgtcatggag |
44607254 |
T |
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| Q |
118 |
gacgaaccacctcggtcgccatccacgaccgtagttaacccacttatacaagataccagatattccattaccaacaatatcattaagcatgagttcacgt |
217 |
Q |
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| T |
44607255 |
gacgaaccacctcggtcgccatccacgaccgtagttaacccacttatacaagataccagatattccattaccaacaatatcattaagcatgagttcacgt |
44607354 |
T |
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| Q |
218 |
gaggtgctttgacgtgccaatctagcagaggcagatcgttgaaccaccctatttgatgaggaggttcgaccatgacggttgcaggtagagagggaacgga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44607355 |
gaggtgctttgacgtgccaatctagcagaggcagatcgttgaaccaccctatttgatgaggaggttcgaccatgacggttgcaggtagagagggaacgga |
44607454 |
T |
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| Q |
318 |
agggagtggaggccttgtgggggttctttgacgatgaatcaggttcatcgtcattttgagctttgcgaaaggattgcatggtaagaatatttggtaatgt |
417 |
Q |
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||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44607455 |
agggagtggaggccttgtgggggttctttgatgatgaaccgggttcatcgtcattttgagctttgcgaaaggattgcatggtaagaatatttggtaatgt |
44607554 |
T |
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| Q |
418 |
gatgt |
422 |
Q |
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| T |
44607555 |
gatgt |
44607559 |
T |
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