View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_17 (Length: 430)
Name: NF8491_low_17
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 149 - 423
Target Start/End: Complemental strand, 2785193 - 2784919
Alignment:
| Q |
149 |
atggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaacagtg |
248 |
Q |
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| T |
2785193 |
atggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaacagtg |
2785094 |
T |
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| Q |
249 |
gtcgaggaaatttcatgagttaggtcattctctgatacaggttccccaagattgacacaaaagtcatgttttggggataccatttattataatatttcaa |
348 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2785093 |
gtcgaggaaatttcatgagttaggtcattctctgatacaggttccacaagattgacacaaaagtcatgttttggggataccatttattataatatttcaa |
2784994 |
T |
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| Q |
349 |
cagttttatggtttttcaccttacattacataccttgctatttgttattggacaattgttattgtgtctgtgctg |
423 |
Q |
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| T |
2784993 |
cagttttatggtttttcaccttacattacataccttgctatttgttattggacaattgttatcgtgtttgtgctg |
2784919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 149 - 336
Target Start/End: Original strand, 22526021 - 22526214
Alignment:
| Q |
149 |
atggttggtgctggaaggggtcaaaactatgttcaagatcctggg---cgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaaca |
245 |
Q |
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| T |
22526021 |
atggttggtgctggaatgggtcaaacctatgttcaaggtcctggggggcgctcacaaatggtttctcagggacaagtttcatcacagggagctacaaaca |
22526120 |
T |
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| Q |
246 |
gtggtcgaggaaatttcatgagttaggtcattctctgatacaggttccccaagattgacacaa---aagtcatgttttggggataccatttatt |
336 |
Q |
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| T |
22526121 |
ttggtggagggaatttcatgagttagctcattctctgatacagcttccccaagattgacacaacaccagtcatgttttggggattctatttatt |
22526214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 280
Target Start/End: Original strand, 22535034 - 22535108
Alignment:
| Q |
206 |
gtttctcagggacaagtttcatcacaaggagctacaaacagtggtcgaggaaatttcatgagttaggtcattctc |
280 |
Q |
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|||||||| ||||| |||||||||||||| |||||||||| || ||| ||||| ||||||||| |||||||| |
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| T |
22535034 |
gtttctcaaggacacgtttcatcacaaggtgctacaaacattgaagaagggaatttgatgagttagttcattctc |
22535108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 149 - 277
Target Start/End: Complemental strand, 29438198 - 29438070
Alignment:
| Q |
149 |
atggttggtgctggaaggggtcaaaactatgttcaagatcctgggcgctcacaaacagtttctcagggacaagtttcatcacaaggagctacaaacagtg |
248 |
Q |
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|||||||||| |||| |||||||| || |||||||| |||||| | |||||||| ||||| ||||| ||||||||||||||| |||||||||||| || |
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| T |
29438198 |
atggttggtgtcggaatgggtcaaacctgtgttcaaggtcctggacactcacaaatggtttcccagggtcaagtttcatcacaacgagctacaaacattg |
29438099 |
T |
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| Q |
249 |
gtcgaggaaatttcatgagttaggtcatt |
277 |
Q |
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| || | ||||||||||||||| ||||| |
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| T |
29438098 |
atggaaggaatttcatgagttagctcatt |
29438070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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