View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_19 (Length: 417)
Name: NF8491_low_19
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 37 - 399
Target Start/End: Original strand, 43878518 - 43878880
Alignment:
| Q |
37 |
agacaaaggaaatacaacacaaaccctttataggacaattgatttttcttttggtaaccttaggaatagtgaacatctctttatatatatacaagtctaa |
136 |
Q |
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| T |
43878518 |
agacaaaggaaatacaacacaaaccctttataggacaattgatttttcttttggtaaccttaggaatagtgaacatctctttatatatatacaagtctaa |
43878617 |
T |
|
| Q |
137 |
gtgaggacaaaattggagaatacacaagaaaacctctcttcaatcatcacatcagaccagaaccacaaatgcttctaagaaaaaccatttgcaagaccag |
236 |
Q |
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| T |
43878618 |
gtgaggacaaaattggagaatacacaagaaaacctctcttcaatcatcacatcagaccagaaccacaaatgcttctaagaaaaaccatttgcaagaccag |
43878717 |
T |
|
| Q |
237 |
atttttacttnnnnnnncactcaaaaacttcaaatgtttcatctttggaaggtatcaaaaactacctagatctctttccttcaatccattcttaggtaga |
336 |
Q |
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| T |
43878718 |
atttttacttaaaaaaacactcaaaaacttcaaatgtttcatctttggagggtatcaaaaactacctagatctctttccttcaatccattcttaggtaga |
43878817 |
T |
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| Q |
337 |
agtagcaatagtgcaagaacatacacaagtgatcaattctacaacgagttttatgatattctt |
399 |
Q |
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| T |
43878818 |
agtagcaatagtgcaagaacatacacaagtgatcaattctacaacgagttttatgatattctt |
43878880 |
T |
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