View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_2 (Length: 912)
Name: NF8491_low_2
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 843; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 843; E-Value: 0
Query Start/End: Original strand, 18 - 904
Target Start/End: Original strand, 34320519 - 34321405
Alignment:
| Q |
18 |
ataccaaagtcaccttctgttctgaatcatagagaagatggtggaaaagatgaagaaaaattcccaaacaaagtccaacactttctaaaatcactagcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320519 |
ataccaaagtcaccttctgttctgaatcatagagaagatggtggaaaagatgaagaaaaattcccaaacaaagtccaacactttctaaaatcactagcaa |
34320618 |
T |
|
| Q |
118 |
aaaatgtaatgtgattttgatggctcatacttcaccatctagtatcagtgttgcacaactgcttggtgatgactgatttgactcnnnnnnnngttttgct |
217 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34320619 |
aaaatgtaatgtgattttgatggctcatatttcaccatctagtatcagtgttgcacaactgcttggtgatgactgatttgactcttttttttgttttgct |
34320718 |
T |
|
| Q |
218 |
aataacatgttgaaattagtgtttgagaacaaaatttgataattatatttgtgctcttgataactactataactgaagcaaggttagactcgcatcaatt |
317 |
Q |
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| T |
34320719 |
aataacatgttgaaattagtgtttgagaacaaaatttgataattatatttgtgctcttgataactactataactgaagcaaggttagactcgcatcaatt |
34320818 |
T |
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| Q |
318 |
gaaaattaaaaaactaagaatatctagtcccctaacatatccaaatcaaatgttacaatgcaatggaagtatgaaactaatacaaggttagagtcacatc |
417 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34320819 |
gaaaattaaaaaactaagaatatctagtcccccaacatatccaaatcaaatgttacaatgcaatggaagtatgaaactaatacaaggttagagtcacatc |
34320918 |
T |
|
| Q |
418 |
aatcgaaaataatattaataatggaaaactaagaatatcgtgttctgcaacatatccgaaatgtaataatgcaattgaagtatgaaactgcaatagcaac |
517 |
Q |
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| T |
34320919 |
aatcgaaaataatattaataatggaaaactaagaatatcgtgttctgcaacatatccgaaatgtaataatacaatggaagtatgaaactgcaatagcaac |
34321018 |
T |
|
| Q |
518 |
atatgcattctgcaaaccataagttaaacacccagtgtaaataactgtgtctgtcgtatctttgtactttttcccctcccgcctagcaaacccagttcca |
617 |
Q |
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| T |
34321019 |
atatgcattctgcaaaccataagttaaacacccagtgtaaataactgtgtctgtcgtatctttgtactttttcccctcccgcctagcaaacccagttcca |
34321118 |
T |
|
| Q |
618 |
atattacagatgcttcaagaagctcaactagctcgaattctatccagccagtcgatgctcttccgcggtctctcaaactgaacatcgacacttcttctgg |
717 |
Q |
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| T |
34321119 |
atattacagatgcttcaagaagctcaactagctcgaattctatccagccagtcgatgctcttccgcggtctctcaaactgaacatcgacacttcttctgg |
34321218 |
T |
|
| Q |
718 |
atttctcttggaattcaatgcttctagatttgtcattgtactctacgcttcttcttgaccgctccgtctggtcaaattggactcttaacttctctaattt |
817 |
Q |
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| T |
34321219 |
atttctcttggaattcaatgcttctagatttgtcattgtactctacgcttcttcttgaccgctccgtctggtcaaattggactcttaacttctctaattt |
34321318 |
T |
|
| Q |
818 |
ctcaggattgttgaatttgaattcatgatatttcagtttttctgacttatcagtacttcttggtggtttgtctctgtgatctctgct |
904 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34321319 |
ctcaggattgttgaatttgaattcatgatatttcagtttttctgacttatcagtacttcttggtggtttgtctctgtgatctgtgct |
34321405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 23872963 - 23873009
Alignment:
| Q |
224 |
atgttgaaattagtgtttgagaacaaaatttgataattatatttgtg |
270 |
Q |
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||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
23872963 |
atgtttaaattggtgtttgagaataaaatttgataattatatttgtg |
23873009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 159
Target Start/End: Original strand, 23872811 - 23872924
Alignment:
| Q |
48 |
agagaagatggtggaaaagatgaag---aaaaattcccaaacaaagtccaacactttctaaaatcactagcaaaaaatgtaatgtgattttgatggctca |
144 |
Q |
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||||||||||||||||||||| ||| || ||||||| |||||| || |||| || |||||||| ||||||| ||||||||||| ||| |||| ||| |
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| T |
23872811 |
agagaagatggtggaaaagattaaggaaaataattccctaacaaaatctaacaaattttaaaatcattagcaaataatgtaatgtg-ctttaatggttca |
23872909 |
T |
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| Q |
145 |
tacttcaccatctag |
159 |
Q |
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|| ||||||||||| |
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| T |
23872910 |
tatgtcaccatctag |
23872924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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