View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8491_low_21 (Length: 410)
Name: NF8491_low_21
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_21 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 8 - 391
Target Start/End: Original strand, 38858355 - 38858738
Alignment:
| Q |
8 |
attgttcaaccaaggatatatgcaccctatcgacttaaaacatcaaatagttacactaatcttattgaaaaaactgaattcacaactttaactaaagtat |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
38858355 |
attgttcaaccaaggatatatgctttctatcgatttaaaacatcaaatagttacactaatcttattgaaaaaaatgaattcaaaactttaactaaagtat |
38858454 |
T |
|
| Q |
108 |
atttttacatttggattgttataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattg |
207 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38858455 |
atttttacatttggattgctataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattg |
38858554 |
T |
|
| Q |
208 |
tctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaatttttcatcc |
307 |
Q |
| |
|
||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
38858555 |
tctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccc |
38858654 |
T |
|
| Q |
308 |
tttgtgaactctgagagacatatcatacaatctgtatccaaagttggtagattcagctcggtggaatagctcattgtaggaaat |
391 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||| ||||||| |||| || || || ||||||| ||| |||||| |
|
|
| T |
38858655 |
tttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaat |
38858738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 118 - 395
Target Start/End: Complemental strand, 38851177 - 38850900
Alignment:
| Q |
118 |
ttggattgttataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctacacttt |
217 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38851177 |
ttggatagttataatagtttctggcactggcaacacaattggttgcacttgcgacccaccaatctttcgacaagtttcaagaagacattgtctgcacttt |
38851078 |
T |
|
| Q |
218 |
ggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaatttttcatcctttgtgaact |
317 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38851077 |
ggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaact |
38850978 |
T |
|
| Q |
318 |
ctgagagacatatcatacaatctgtatccaaagttggtagattcagctcggtggaatagctcattgtaggaaatttct |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38850977 |
ctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaatagctcattgtaggaaatttct |
38850900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 126 - 395
Target Start/End: Original strand, 38861347 - 38861616
Alignment:
| Q |
126 |
ttataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctacactttggacatga |
225 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38861347 |
ttataatagtttctggcactggcaacaaaattggttgcacttgcgacccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatga |
38861446 |
T |
|
| Q |
226 |
tgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaatttttcatcctttgtgaactctgagaga |
325 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38861447 |
tgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagaga |
38861546 |
T |
|
| Q |
326 |
catatcatacaatctgtatccaaagttggtagattcagctcggtggaatagctcattgtaggaaatttct |
395 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38861547 |
catatcatacaatctgtatccaaacttggtagattcaactcggtggaatagctcattgtaggaaatttct |
38861616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 126 - 391
Target Start/End: Original strand, 38840735 - 38841000
Alignment:
| Q |
126 |
ttataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctacactttggacatga |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38840735 |
ttataataatttctggcactggcaacacaattggttgcacctgcgacccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatga |
38840834 |
T |
|
| Q |
226 |
tgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaatttttcatcctttgtgaactctgagaga |
325 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
38840835 |
tgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagaga |
38840934 |
T |
|
| Q |
326 |
catatcatacaatctgtatccaaagttggtagattcagctcggtggaatagctcattgtaggaaat |
391 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| |||| || || || ||||||| ||| |||||| |
|
|
| T |
38840935 |
catatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtagctcactgtgggaaat |
38841000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 177 - 380
Target Start/End: Original strand, 38864853 - 38865056
Alignment:
| Q |
177 |
caatctttcgacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
276 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38864853 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
38864952 |
T |
|
| Q |
277 |
gcatttaggcaaaatgcgcaatttttcatcctttgtgaactctgagagacatatcatacaatctgtatccaaagttggtagattcagctcggtggaatag |
376 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||| ||||||||||||||||| ||||| |||||||||||| |||| || |||| ||| | |||||| |
|
|
| T |
38864953 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
38865052 |
T |
|
| Q |
377 |
ctca |
380 |
Q |
| |
|
|||| |
|
|
| T |
38865053 |
ctca |
38865056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 177 - 375
Target Start/End: Original strand, 38846606 - 38846804
Alignment:
| Q |
177 |
caatctttcgacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
276 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| || |
|
|
| T |
38846606 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatgatt |
38846705 |
T |
|
| Q |
277 |
gcatttaggcaaaatgcgcaatttttcatcctttgtgaactctgagagacatatcatacaatctgtatccaaagttggtagattcagctcggtggaata |
375 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||| |||||||||||||||| ||| |||||||||||||||||||| |||| ||| || ||||| |
|
|
| T |
38846706 |
gcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagtttcaactcagttgaata |
38846804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 177 - 357
Target Start/End: Original strand, 38826998 - 38827178
Alignment:
| Q |
177 |
caatctttcgacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
276 |
Q |
| |
|
|||||||||||||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| || |
|
|
| T |
38826998 |
caatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatgatt |
38827097 |
T |
|
| Q |
277 |
gcatttaggcaaaatgcgcaatttttcatcctttgtgaactctgagagacatatcatacaatctgtatccaaagttggtag |
357 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||| |||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
38827098 |
gcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtag |
38827178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 237 - 332
Target Start/End: Original strand, 43666059 - 43666154
Alignment:
| Q |
237 |
ttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaatttttcatcctttgtgaactctgagagacatatca |
332 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || || ||||||| ||||| ||| || | || |||||||| || |||||||||| |
|
|
| T |
43666059 |
ttagccatttgtcaatgcaacgaacatgaaatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatca |
43666154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University