View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_22 (Length: 403)
Name: NF8491_low_22
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 748415 - 748062
Alignment:
| Q |
1 |
tgacggagagagtatggaaacaacattggttctggaagaggtttatggaagatgaaaatgagaaagtagctaatgctgattatcctaagatcaaaaataa |
100 |
Q |
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| T |
748415 |
tgaccgagagagtatggaaacaacattggttctggaagaggtttatggaagatgacaatgagaaagtatctaatgctgattatcctaagatcaaaaataa |
748316 |
T |
|
| Q |
101 |
tccaaattcccaattgtaaaatattatgcttagttattttgatttgtgccttcaaacatcaaatcaactatcttcttttggaagttggattttatttctt |
200 |
Q |
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| T |
748315 |
tccaaattcccaattgtaaaatactatgcttagttattttgatttgtgcctt----------------------cttttggaagttggattttatttctt |
748238 |
T |
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| Q |
201 |
ccctgtttcttctttgttacaaattttgtctatggaaacaataataatatatatggattannnnnnncagattaatgtttggttatgttctatactatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
748237 |
ccctgtttcttctttgttacaaattttgtctatggaaacaataataatatatatggattatttttttcagat----------ttatgttctatactatat |
748148 |
T |
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| Q |
301 |
tttgatattttactttcgatggttgcttttattattcatgcaaaccaatgaattatgagtgatcaccactctgaaaattatccttt |
386 |
Q |
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| T |
748147 |
tttgatattttactttcgatggttgcttttattattcatgcaaaccaatgaattatgagtgatcaccactctgaaaattatccttt |
748062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 47186253 - 47186294
Alignment:
| Q |
6 |
gagagagtatggaaacaacattggttctggaagaggtttatg |
47 |
Q |
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| T |
47186253 |
gagaaagtatggaaacaacattggttctggaagaggtttatg |
47186294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 47198792 - 47198833
Alignment:
| Q |
6 |
gagagagtatggaaacaacattggttctggaagaggtttatg |
47 |
Q |
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|||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
47198792 |
gagacagtgtggaaacaacattggttctggaggaggtttatg |
47198833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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