View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8491_low_23 (Length: 402)
Name: NF8491_low_23
Description: NF8491
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8491_low_23 |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 6234171 - 6233794
Alignment:
| Q |
18 |
taactcttataccataatgtatgatgnnnnnnnnattctgtttccgaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaagg |
117 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6234171 |
taactcttataccataatgtatgatgttttttttattctgtttctgaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaagg |
6234072 |
T |
|
| Q |
118 |
aagagtggaagctagagacactatgcgacatcttcgagctgaccctgaaagct---aaatccatcactcattgtatcgtctttgtgaacactatcgacaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6234071 |
aagagtggaagctagagacactatgcgacatctttgagctgacccttaaagcttataaatccatcactcattgtatcgtctttgtgaatactatcgacaa |
6233972 |
T |
|
| Q |
215 |
agtggactggctcacggacaagatgcgaagcagagatcattatgtcattcatggtgacagggaccagaacactatggataccattgaaggtgagtttctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6233971 |
agtggactggctcacggacaagatgcgaagcagagatcattatgtcattcatggtgacagggaccagaacactatggataccattgaacgtgagtttctt |
6233872 |
T |
|
| Q |
315 |
ttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6233871 |
ttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctg |
6233794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 52 - 254
Target Start/End: Complemental strand, 6226882 - 6226680
Alignment:
| Q |
52 |
attctgtttccgaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatctt |
151 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
6226882 |
attctgtttccgaaggttttgggaggccctcttcaatcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgtgacatatt |
6226783 |
T |
|
| Q |
152 |
cgagctgaccctgaaagctaaatccatcactcattgtatcgtctttgtgaacactatcgacaaagtggactggctcacggacaagatgcgaagcagagat |
251 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| |||| || |||||||||||||| |
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| T |
6226782 |
tgagctgacccttaaagctaaatccatcactcattgtatcgtctttgtgaataccatggacaaagtggactggctcatggacgagttgcgaagcagagat |
6226683 |
T |
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| Q |
252 |
cat |
254 |
Q |
| |
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||| |
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| T |
6226682 |
cat |
6226680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 306 - 392
Target Start/End: Complemental strand, 6226622 - 6226536
Alignment:
| Q |
306 |
gagtttcttttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcataaagcgtctctg |
392 |
Q |
| |
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|||||| ||| | ||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
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| T |
6226622 |
gagtttttttcccagtctagctctcctcaagttctcattaccaccgacccccagctttgtggtgcagatgtgcataaagcgtctctg |
6226536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 6249475 - 6249434
Alignment:
| Q |
213 |
aaagtggactggctcacggacaagatgcgaagcagagatcat |
254 |
Q |
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| T |
6249475 |
aaagtggactggcttacggataagatgcgaagcagagatcat |
6249434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6227045 - 6227013
Alignment:
| Q |
1 |
ttagtatgttgcaagtttaactcttataccata |
33 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
6227045 |
ttagtatgttgcaagtttaactcttataccata |
6227013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 6241072 - 6241036
Alignment:
| Q |
212 |
caaagtggactggctcacggacaagatgcgaagcaga |
248 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||| |
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|
| T |
6241072 |
caaagtggactggctcatggacaaaatgcgaagcaga |
6241036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 6249589 - 6249521
Alignment:
| Q |
87 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgag |
155 |
Q |
| |
|
||||||||||||||||| |||| || |||||||| |||||||| |||||| | |||||| ||| |||| |
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| T |
6249589 |
atcaagcagttttatgtcaatgtcgataaggaagaatggaagcttgagacattgtgcgacctctacgag |
6249521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 87 - 384
Target Start/End: Original strand, 17545269 - 17545572
Alignment:
| Q |
87 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagacactatgcgacatcttcgagctgaccctgaaagctaaatccatcactcatt |
186 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||| |||||||||| |
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| T |
17545269 |
atcaagcagttttatgtcgatgttgagaaggaagagtggaagctagagacactatgcgacatctttgagctgaccgttaaagctaaatcgatcactcatt |
17545368 |
T |
|
| Q |
187 |
gtatcgtctttgtgaacactatcgacaaagtggactggctcacggacaagatgcgaagcagagatcatta--tgtcattcat----ggtgacagggacca |
280 |
Q |
| |
|
|||| ||||||||| | || | ||||||||| ||||||||||||||||||| ||||||||||||| | ||||| |||| |||||| |||||| |
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| T |
17545369 |
gtattgtctttgtggataccaggtgcaaagtggattggctcacggacaagatgcaaagcagagatcataaagtgtcagtcatccagagtgacatggacca |
17545468 |
T |
|
| Q |
281 |
gaacactatggataccattgaaggtgagtttcttttcgagtctggctctcctcaagttctcattaccaccgaccccctcgtttgtggtacagatttgcat |
380 |
Q |
| |
|
|||||||| ||||| ||||| | ||||| ||| | |||||||||||||||| |||||||||||||| |||||| | ||||||||||||||| ||||| |
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| T |
17545469 |
gaacactagggatatcattgtgcgcgagttcttttcccagtctggctctcctcatgttctcattaccacagaccccttggtttgtggtacagatgtgcat |
17545568 |
T |
|
| Q |
381 |
aaag |
384 |
Q |
| |
|
|||| |
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|
| T |
17545569 |
aaag |
17545572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 17544416 - 17544458
Alignment:
| Q |
52 |
attctgtttccgaaggttttgggaggccctcttcaatcaagca |
94 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
17544416 |
attctgtttctgaaggttttgggaggccctcttcaatccagca |
17544458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 137
Target Start/End: Original strand, 42718725 - 42718775
Alignment:
| Q |
87 |
atcaagcagttttatgtggatgttgacaaggaagagtggaagctagagaca |
137 |
Q |
| |
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||||||||||| || ||| |||||||||||||||||||||| ||||||||| |
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| T |
42718725 |
atcaagcagttctacgtgaatgttgacaaggaagagtggaaactagagaca |
42718775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 273086 - 273044
Alignment:
| Q |
52 |
attctgtttccgaaggttttgggaggccctcttcaatcaagca |
94 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||| |
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|
| T |
273086 |
attctgtttctgaaggttttgggaggccttcttcaatccagca |
273044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 875124 - 875166
Alignment:
| Q |
52 |
attctgtttccgaaggttttgggaggccctcttcaatcaagca |
94 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||| |||| |
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|
| T |
875124 |
attctgtttctgaaggttttgggaggccttcttcaatccagca |
875166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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